View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_9 (Length: 389)
Name: NF10119_low_9
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 15176395 - 15176767
Alignment:
| Q |
1 |
atctctttactccccattatatcgaaagtgctattattgataaacctctccggcttaaatgccgtaggatcatcccaagccgaaaaatctctccctatct |
100 |
Q |
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| T |
15176395 |
atctctttactccccattatatcgaaagtactattattgataaacctctccggtttaaatgccataggatcatcccaagccgaaaaatctctccctatct |
15176494 |
T |
|
| Q |
101 |
cagccaccaagaaattcacagatgcaaaagtaggcaccgaataaccatttaaaacaacctcttctgtcactctatgaggagcaacatagtgtaacggtgg |
200 |
Q |
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| T |
15176495 |
ccgccaccaagaaattcacagatgcaaaagtaggcaccgaataaccatttaaaacaacctcttcggtcactctatgaggagcaacatagtgcaacggtgg |
15176594 |
T |
|
| Q |
201 |
atgccgtcttagcccttccaaaatcacagctttaagatatggcannnnnnncaaatcttcttctctaatttctttctcctttttatcatctccaatcacc |
300 |
Q |
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||| || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15176595 |
atgacgccttagcccttccaaaattacagctttaagatatggcatttttttcaaatcttcttctctaatttctttctcctttttatcatctccaatcacc |
15176694 |
T |
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| Q |
301 |
cctttaatctcttgtacaagtttttgttgtatatcttggtacttcaccaaattcgccatgatccattccaatg |
373 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15176695 |
cctttaatctcttgtacaagtttttcttgtatatcttggtacttcaccaaattcgccatgatccattccaatg |
15176767 |
T |
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