View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10120_high_2 (Length: 460)
Name: NF10120_high_2
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 27241009 - 27240599
Alignment:
| Q |
18 |
gtaagaggataggaacaatgagaattattaagatggtgcagggaagggaatgcgtcggagaagaaggaacggtaaccaccggggaaagtggagatgacgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27241009 |
gtaagaggataggaacaatgagaattattaagatggtgcagggaagggaatgcgtcggagaaaaaggaacggtaaccaccagggaaagtggagatgacgt |
27240910 |
T |
|
| Q |
118 |
tgtgaacaataggatccttcagtaaagaaggccactttgaggtacatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27240909 |
tgtgaacaataggatccttcagtaaagaaggccactttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctga |
27240810 |
T |
|
| Q |
218 |
acatacagaggataagacgattaaggttgtgccgtcgaggcggggaaagatgtgggtatgcatgatgtctggatctaacctactgaatatactcatactc |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27240809 |
acatacagagaataagacgattaaggttgtgccgtcgaggcggggaaggatgtgggtatgcatgatgtctggatctaacctactgaatatactcatactc |
27240710 |
T |
|
| Q |
318 |
atggtgattgattggtgaacgaccaacttgttttgaagaggctagggttttattgtgtgacagtgaaaactcgtgttttggttt-tatacagggttagga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| | |
|
|
| T |
27240709 |
atggtgattgattggtgaacgaccaacttgttttgacgaggctagggttttattgtgtgacagtgaaaacttgtgttttggtttatatatagggttagaa |
27240610 |
T |
|
| Q |
417 |
cggagattagg |
427 |
Q |
| |
|
| | ||||||| |
|
|
| T |
27240609 |
ccgggattagg |
27240599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 57 - 332
Target Start/End: Complemental strand, 27257572 - 27257297
Alignment:
| Q |
57 |
agggaagggaatgcgtcggagaagaaggaacggtaaccaccggggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggccactttg |
156 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||| ||| |||||||||||| ||| |
|
|
| T |
27257572 |
agggaagggaaggcgtccgagaagaaggaacggtaacctccagggaaagtagagataacgttgtgaacgataggatccaacagcaaagaaggccacgttg |
27257473 |
T |
|
| Q |
157 |
aggtacatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagaggataagacgattaaggttgtgccgtcgag |
256 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27257472 |
aggtgcatatgttccgccatagatcttcgttgctgtggcaaatcatgtgacgaagttctgaacacacagaggataagacggttaaggttgtgccgtcgag |
27257373 |
T |
|
| Q |
257 |
gcggggaaagatgtgggtatgcatgatgtctggatctaacctactgaatatactcatactcatggtgattgattgg |
332 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
27257372 |
acggggaaggatgtgggtatgaatgatgtctgtatctaacctactgaagatattcattctcatggtgattgattgg |
27257297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 74 - 323
Target Start/End: Complemental strand, 27253262 - 27253016
Alignment:
| Q |
74 |
ggagaagaaggaacggtaaccaccggggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggccactttgaggtacatatgttccgc |
173 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| | | || |||||| || ||||||||||| |||| || |||||||||||| |
|
|
| T |
27253262 |
ggagaagaaggaacggtaaccaccgggaaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaagtgcatatgttccgc |
27253163 |
T |
|
| Q |
174 |
catagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagaggataagacgattaaggttgtgccgtcgaggcggggaaagatgtggg |
273 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||||| ||||| ||||||| | | ||||||||||||| ||||||||||| | |||||||| |
|
|
| T |
27253162 |
catagatcttcgttgttg---cagatcatgtggcggagttctgaagatacacaggataatatggttaaggttgtgccatcgaggcggggcaggatgtggg |
27253066 |
T |
|
| Q |
274 |
tatgcatgatgtctggatctaacctactgaatatactcatactcatggtg |
323 |
Q |
| |
|
| | || || |||||||| ||| || ||| |||| ||| ||||||||| |
|
|
| T |
27253065 |
cacgaataatatctggatccaacgaacagaagatacccatgctcatggtg |
27253016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 27246482 - 27246232
Alignment:
| Q |
74 |
ggagaagaaggaacggtaaccaccggggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggccactttgaggtacatatgttccgc |
173 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||| | | || |||||| || ||||||||||| ||||||| |||||||||||| |
|
|
| T |
27246482 |
ggagaagaaggaatggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgc |
27246383 |
T |
|
| Q |
174 |
catagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagaggataagacgattaaggttgtgccgtcgaggcggggaaagatgtggg |
273 |
Q |
| |
|
|||| |||| |||| || ||| |||||||| |||||||||||| |||| ||||| ||| || |||||||||| || ||||||||||| | |||||||| |
|
|
| T |
27246382 |
cataaatct---ttgtcgttgcagatcatgtggcggagttctgaagatacggaggagaaggcggttaaggttgttccatcgaggcggggcaggatgtggg |
27246286 |
T |
|
| Q |
274 |
tatgcatgatgtctggatctaacctactgaatatactcatactcatggtgattg |
327 |
Q |
| |
|
| || || |||||||| ||| ||||||| ||| |||| ||||||||||||| |
|
|
| T |
27246285 |
caccgataatatctggatccaacgtactgaagatattcatgctcatggtgattg |
27246232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 27248635 - 27248586
Alignment:
| Q |
22 |
gaggataggaacaatgagaattattaagatggtgcagggaagggaatgcg |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27248635 |
gaggataggaacaatgagaattattaagatggtgcagtgaagggaatgcg |
27248586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 7501966 - 7502247
Alignment:
| Q |
22 |
gaggataggaacaatgagaattattaagatggtgcagggaagggaatgcgtcggagaagaaggaacggtaaccaccggggaaagtggagatgacgttgtg |
121 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||| ||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||| | || |
|
|
| T |
7501966 |
gaggataggaacggtgagaattagtatgatggtgaagggaagggaacgcatcggagaagaatgaactgtaaccaccggggaaagtggagatgacatcgtt |
7502065 |
T |
|
| Q |
122 |
aacaataggatccttcagtaaagaaggccactttgaggtacatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacat |
221 |
Q |
| |
|
||| || |||||| | || ||||||||||||||||| || || ||||||||||||| | |||||||| ||| |||| ||| |||||||||| | | |
|
|
| T |
7502066 |
aacgattggatccataag---ggaaggccactttgaggtgcaaatattccgccatagattgttgttgttgttgcagatcaggtggcggagttctggagac |
7502162 |
T |
|
| Q |
222 |
acagaggataagacgattaa--ggttgtgccgtcgaggcggggaaagatgtgggtatgcatgatgtctggatctaacctactgaa |
304 |
Q |
| |
|
|| | |||||| || |||| ||||||||||||||| |||| ||||||| | | |||||||||| ||||||||||||||| |
|
|
| T |
7502163 |
acggtcgataaggcggttaaatcagtgtgccgtcgaggcgtggaaggatgtggctgttaatgatgtctgaatctaacctactgaa |
7502247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 7500561 - 7500809
Alignment:
| Q |
50 |
atggtgcagggaagggaatgcgtcggagaagaaggaacggtaaccaccggggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggc |
149 |
Q |
| |
|
|||||| | |||||| || ||||||||||||||||||||||||||||| |||||||||| ||| | || | ||| | |||| | || | ||||| |
|
|
| T |
7500561 |
atggtgaatggaaggaaacgcgtcggagaagaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggatgc---agaaggcaaggc |
7500657 |
T |
|
| Q |
150 |
cactttgaggtacatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagaggataagacgattaaggttgtgc |
249 |
Q |
| |
|
||| | ||||| || ||||||||||||| || ||||||||| || |||| ||| || || || ||||||||| |||| || | ||||||| || | |
|
|
| T |
7500658 |
cacatggaggtgcaaatgttccgccataattcctcgttgttg---cagatcaagtggcgaaggtcggaacatacacaggacaatgccattaaggctgccc |
7500754 |
T |
|
| Q |
250 |
cgtcgaggcggggaaagatgtgggtatgcatgatgtctggatctaacctactgaa |
304 |
Q |
| |
|
| |||||||| |||| ||| | ||| || |||||||||||||||||||||||||| |
|
|
| T |
7500755 |
catcgaggcgtggaaggatataggtctggatgatgtctggatctaacctactgaa |
7500809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 304
Target Start/End: Complemental strand, 8057353 - 8057215
Alignment:
| Q |
166 |
tgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagaggataagacgattaaggttgtgccgtcgaggcggggaaa |
265 |
Q |
| |
|
|||||| ||||||||| ||||||| || ||| |||||||| |||| ||| ||| | || |||||||| | ||| |||||| ||| ||||||| |||| |
|
|
| T |
8057353 |
tgttccaccatagatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgaggataacatgatcaaggtttcaccgccgaggcgtggaag |
8057254 |
T |
|
| Q |
266 |
gatgtgggtatgcatgatgtctggatctaacctactgaa |
304 |
Q |
| |
|
||||| || | |||||||||||| |||||||||||| |
|
|
| T |
8057253 |
aatgtgagttagaatgatgtctggacataacctactgaa |
8057215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University