View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10120_high_4 (Length: 323)
Name: NF10120_high_4
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_high_4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 39783419 - 39783728
Alignment:
| Q |
14 |
gatgtctatgagtttttgactatgattgaagctgcattggtcagtataagttatagcaaagacatatgcaacttcaatatcagtaacggagacatcaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39783419 |
gatgtctatgagtttttgactatgattgaagctgcattggtcagtataagttatagcaaagacatatgcaacttcaatatcagtaatggagacatcaaat |
39783518 |
T |
|
| Q |
114 |
accttgaactactaatacttatagaaagaataacgtggaggaatagatatagaagtacctgttgtttgaaagtttcttcatgctttaacatggccatcct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783519 |
accttgaactactaatacttatagaaagaataacgtggaggaatagatatagaagtacctgttgtttgaaagtttcttcatgctttaacatggccatcct |
39783618 |
T |
|
| Q |
214 |
catgtattctttgtcacgtgacctaacaagcttctccatgaatgatcaatttagtttctatagaggctaactagttttgaaccttctttgtcccaagttt |
313 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783619 |
catgtattctttgtcacatgacctaacaagcttctccatcaatgatcaatttagtttctatagaggctaactagttttgaaccttctttgtcccaagttt |
39783718 |
T |
|
| Q |
314 |
accttcatac |
323 |
Q |
| |
|
|||||||||| |
|
|
| T |
39783719 |
accttcatac |
39783728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University