View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10120_low_1 (Length: 531)
Name: NF10120_low_1
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 84 - 519
Target Start/End: Complemental strand, 26417465 - 26417030
Alignment:
| Q |
84 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcattaatattacatggtagacgtaagga |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26417465 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcaataatattacatggtagacgtaagga |
26417366 |
T |
|
| Q |
184 |
ttttaaataagttctaacctacaaagnnnnnnngttagaacaaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcatg |
283 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26417365 |
ttttaaataagttctaacctacaaagtttttttgttagaacgaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcatg |
26417266 |
T |
|
| Q |
284 |
gtgctatcttcatgtccaataggattactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtcaa |
383 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26417265 |
gtgctatcttcatgtccaataagagtactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtcaa |
26417166 |
T |
|
| Q |
384 |
ggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcgataacagatggcggcatgaacattgctcctcgtgca |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26417165 |
ggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggttttttaagcgataacagatggcggcatgaacattgctcctcgtgca |
26417066 |
T |
|
| Q |
484 |
tatgtttcatctggaaagcagttccctgcacaggtt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26417065 |
tatgtttcatctggaaagcagttccctgcacaggtt |
26417030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 26417498 - 26417451
Alignment:
| Q |
19 |
aagtgtactataatatgtaatgcatatgtataacgttcactatttgct |
66 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26417498 |
aagtgtactataatatgtaatgcatatgtataacattcactatttgct |
26417451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 84 - 519
Target Start/End: Original strand, 27983503 - 27983939
Alignment:
| Q |
84 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcattaatattacatggtagacgtaagga |
183 |
Q |
| |
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||||||||||||||||||||||| |||||| || |||||||||||||||| | ||||| ||||||||||||||| ||||||| ||| |||| ||||||| |
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| T |
27983503 |
cattcactatttgcttcttgaatggaacttcgcccttgtaattgaaatttgcttgtccatgtgctaatttttcaataatattgcatagtaggtgtaagga |
27983602 |
T |
|
| Q |
184 |
ttttaaataagttctaacctacaaagnnnnnnn-gttagaacaaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcat |
282 |
Q |
| |
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|||||| ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
27983603 |
ttttaagtaagttctaaccttcacagttttttttgttagaacgaaaatggacgccggagatttgtgcaaaaataaggagtctggaatttttcctgagcat |
27983702 |
T |
|
| Q |
283 |
ggtgctatcttcatgtccaataggattactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtca |
382 |
Q |
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||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
27983703 |
ggtgccatcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtca |
27983802 |
T |
|
| Q |
383 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcgataacagatggcggcatgaacattgctcctcgtgc |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||| ||| |
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| T |
27983803 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgc |
27983902 |
T |
|
| Q |
483 |
atatgtttcatctggaaagcagttccctgcacaggtt |
519 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
27983903 |
atatgtttcatctggacagcagttccctgcacaggtt |
27983939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 84 - 519
Target Start/End: Original strand, 28070033 - 28070469
Alignment:
| Q |
84 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcattaatattacatggtagacgtaagga |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||||||| | ||||| ||||||||||||||| ||||||| ||| |||| ||||||| |
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| T |
28070033 |
cattcactatttgcttcttgaatggaacttcgcccttgtaattgaaatttgcttgtccatgtgctaatttttcaataatattgcatagtaggtgtaagga |
28070132 |
T |
|
| Q |
184 |
ttttaaataagttctaacctacaaagnnnnnnn-gttagaacaaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcat |
282 |
Q |
| |
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|||||| ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
28070133 |
ttttaagtaagttctaaccttcacagttttttttgttagaacgaaaatggacgccggagatttgtgcaaaaataaggagtctggaatttttcctgagcat |
28070232 |
T |
|
| Q |
283 |
ggtgctatcttcatgtccaataggattactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtca |
382 |
Q |
| |
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||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
28070233 |
ggtgccatcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtca |
28070332 |
T |
|
| Q |
383 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcgataacagatggcggcatgaacattgctcctcgtgc |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||| ||| |
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| T |
28070333 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgc |
28070432 |
T |
|
| Q |
483 |
atatgtttcatctggaaagcagttccctgcacaggtt |
519 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
28070433 |
atatgtttcatctggacagcagttccctgcacaggtt |
28070469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 27983470 - 27983517
Alignment:
| Q |
19 |
aagtgtactataatatgtaatgcatatgtataacgttcactatttgct |
66 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
27983470 |
aagtgtactataatatgtaatgcatatgcataacattcactatttgct |
27983517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 28070000 - 28070047
Alignment:
| Q |
19 |
aagtgtactataatatgtaatgcatatgtataacgttcactatttgct |
66 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
28070000 |
aagtgtactataatatgtaatgcatatgcataacattcactatttgct |
28070047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 27982098 - 27982143
Alignment:
| Q |
19 |
aagtgtactataatatgtaatgcatatgtataacgttcactatttg |
64 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| | ||||||||| |
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|
| T |
27982098 |
aagtgtattataatatgaaatgcatatgtataacatccactatttg |
27982143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 28068628 - 28068673
Alignment:
| Q |
19 |
aagtgtactataatatgtaatgcatatgtataacgttcactatttg |
64 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| | ||||||||| |
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|
| T |
28068628 |
aagtgtattataatatgaaatgcatatgtataacatccactatttg |
28068673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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