View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10120_low_10 (Length: 376)
Name: NF10120_low_10
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 9166816 - 9167177
Alignment:
| Q |
19 |
ttcttgtacttctcctatgtaatgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgcaaatattcactttgttc |
118 |
Q |
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| T |
9166816 |
ttcttgtacttctcctatgtaatgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgcaaatattcactttgttc |
9166915 |
T |
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| Q |
119 |
atgacaaatgttatcatcttttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagacacggtgtattcagtatcgc |
218 |
Q |
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| T |
9166916 |
atgacaaatattatcatcttttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagacacggtgtattcagtatcgt |
9167015 |
T |
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| Q |
219 |
actatgaataaaatacaatccgcttatccac--gg------tgt-attcatcttttatttatacatatgaacatacgaaataagaaagtattaaaggttc |
309 |
Q |
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| T |
9167016 |
actatgaataaaatacaatgcacttatccacatggcaccattgtcatatatcttttatttatacatatgaacatacgaaataagaaagtattaaaggttc |
9167115 |
T |
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| Q |
310 |
acaacttcaatgagagcannnnnnnaattaaaatgttgtgttttcaagcagttcttctctct |
371 |
Q |
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| T |
9167116 |
acaacttcaatgagagcatatttttaattaaaatgttgtgttttcaagcagttcttttctct |
9167177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 9155396 - 9155582
Alignment:
| Q |
19 |
ttcttgtacttctcctatgtaatgcaacaacaaatcacacatgaacaaaaaagaaa---agaatcgacctattacaacccacatgcaaatattcactttg |
115 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||| | |||| ||||||||| |
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| T |
9155396 |
ttcttgtacttctcctatgcaatgcaacaccaaatcacacatgaacaaaaaagaaaaacaaaattgacctattacaacccagaggcaataattcactttc |
9155495 |
T |
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| Q |
116 |
ttcatgacaa--atgttatcatcttttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagaca |
200 |
Q |
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| T |
9155496 |
ttcatgacaaacacataatcctcttttcatgtccacaacaatcatcaattaaacaactcaatattttgacccaacattaccatgaca |
9155582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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