View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10120_low_12 (Length: 356)
Name: NF10120_low_12
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 30801117 - 30801448
Alignment:
| Q |
18 |
tcaagagcaatccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30801117 |
tcaagagcaatccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattc |
30801216 |
T |
|
| Q |
118 |
ccattgccaaacttggttcaggacatcgtggataatgattaaccgaaagaatcattgacccggtaagatcattgtcaaaatatccacacttcaggccgag |
217 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30801217 |
ccagtgccaaatttggttcaggacatcgtggataatgattaaccgaaagaatcattgacccggtaagatcattgtcaaaatatccacacttcaggccgag |
30801316 |
T |
|
| Q |
218 |
cccttcactgatcaaattcatgagccgcgaacctaattccttaacttcatttgagaaatcccctacacactctctgttaaaaaaggtttattagatcaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30801317 |
cccttcactgatcaaattcatgagccgcgaacctaattccttaacttcatttgagaaatcccctacacactctctgttaaaaaaggtttattagatcaaa |
30801416 |
T |
|
| Q |
318 |
ctattacatatgcaaggataatacctatgcta |
349 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |
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| T |
30801417 |
ctattacatatgcaaggataatacttatgcta |
30801448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 30808544 - 30808835
Alignment:
| Q |
18 |
tcaagagcaatccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattc |
117 |
Q |
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|||| ||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||| |||||||| | |||| |
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| T |
30808544 |
tcaacagcgatccactctccatccttgaatacttgaagaccagatacatcgtcttgcagtaaaatggtgatgaggttaggatctgagtgtttggtaattc |
30808643 |
T |
|
| Q |
118 |
ccattgccaaacttggttcaggacatcgtggataatgattaaccgaaagaatcattgacccggtaagatcattgtcaaaatatccacacttcaggccgag |
217 |
Q |
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| | || |||| ||||||| |||||| ||||||||||||||||||| | || ||||| ||||||||||||||||||||||| ||| ||| ||||| || |
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| T |
30808644 |
ctaatgtcaaatttggttccggacatggtggataatgattaaccgacaaaagaattgaaccggtaagatcattgtcaaaataaccatactctaggccaag |
30808743 |
T |
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| Q |
218 |
cccttcactgatcaaattcatgagccgcgaacctaattccttaacttcatttgagaaatcccctacacactctctgttaaaaaaggtttatt |
309 |
Q |
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|||||||| || |||||||||| || |||||| | || |||||||||| |||||||||| || ||||| || ||| ||||||||| |||| |
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| T |
30808744 |
cccttcaccgaataaattcatgatcctcgaacccagtttcttaacttcagttgagaaatcaccaacacattccctgccaaaaaaggtctatt |
30808835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 30793401 - 30793673
Alignment:
| Q |
18 |
tcaagagcaatccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattc |
117 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || || |||||||| || |||| ||||||| |
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| T |
30793401 |
tcaagagcgatccactctccatccttcaatacttgaagaccacatacatcatcttgcattaaaatggtaataagatttggatctgaaagtttgctcattc |
30793500 |
T |
|
| Q |
118 |
ccattgccaaacttggttcaggacatcgtggataatgattaaccgaaagaatcattgacccggtaagatcattgtcaaaatatccacactt-----cagg |
212 |
Q |
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| | || ||||||||||| ||| ||| || ||||||| ||| | | |||||||| || ||||||||||||||||||||||||||||| || |
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| T |
30793501 |
ctaatgtcaaacttggtttagggcatgccgggtaatgataaactaataatatcattga-ccagtaagatcattgtcaaaatatccacacttcaaaccaaa |
30793599 |
T |
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| Q |
213 |
ccgagcccttcactgatcaaattcatgagccgcgaacctaattccttaacttcatttgagaaatcccctacaca |
286 |
Q |
| |
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|| || ||| | ||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||| |
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| T |
30793600 |
ccaagtcctcccctgatcaaattcatgagcctcgaacctaattctttaacttcatttgaaaaatctcctacaca |
30793673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 30783551 - 30783785
Alignment:
| Q |
27 |
atccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattcccattgcca |
126 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||| | || | || || |
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| T |
30783551 |
atccactttccatcctttaatacttgaagaccacttacatcatcttgcattaaaatggtgatgaggtaaggatctttgtgtttggataaacctaatgtca |
30783650 |
T |
|
| Q |
127 |
aacttggttcaggacatcgtggataatgattaaccgaaagaatcattgacccggtaagatcattgtcaaaatatccacacttcaggccgagcccttcact |
226 |
Q |
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||||||||| ||| || ||||||||||||||| || ||||| ||| ||||||||||| |||||||||||||||| || ||| || ||||||||||| |
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| T |
30783651 |
aacttggttaagggcacggtggataatgattaattgaggtaatcaatgatccggtaagatcgttgtcaaaatatccacgctgcagaccaagcccttcact |
30783750 |
T |
|
| Q |
227 |
gatcaaattcatgagccgcgaacctaattccttaa |
261 |
Q |
| |
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||||||| ||||| || | |||| || ||||||| |
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| T |
30783751 |
aatcaaatccatgatcctccaacccaactccttaa |
30783785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 293
Target Start/End: Original strand, 30740243 - 30740509
Alignment:
| Q |
27 |
atccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattcccattgcca |
126 |
Q |
| |
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||||| |||||||| || ||||||||||| ||| ||||||||||||||||||||| |||||||||| | ||| |||||| | || | | | |
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| T |
30740243 |
atccaatttccatcttttaatacttgaaggccacttacatcatcttgcattaaaatggtgatgaggtaagcatctttgtgtttgggtaaacctaaagtta |
30740342 |
T |
|
| Q |
127 |
aacttggttcaggacatcgtggataatgattaaccgaaagaatcattgacccggtaagatcattgtcaaaatatccacacttcaggccgagcccttcact |
226 |
Q |
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||||||||||||| ||| |||| |||||||||| || ||||||||| |||| |||||| || |||||||||||||||||||| || | ||||| || |
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| T |
30740343 |
aacttggttcagggcatggtgggtaatgattaattgaggtaatcattgatccggcaagatcgttttcaaaatatccacacttcagaccaatccctttgct |
30740442 |
T |
|
| Q |
227 |
gatcaaattcatgagccgcgaacctaattccttaacttcatttgagaaatcccctacacactctctg |
293 |
Q |
| |
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||| |||| || || || ||||| || ||||||| || | | || |||||||| ||||| |||||| |
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| T |
30740443 |
gattaaatccaagatccttgaacccaactccttaattttaatcgaaaaatccccaacacattctctg |
30740509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 30759174 - 30759282
Alignment:
| Q |
185 |
atcattgtcaaaatatccacacttcaggccgagcccttcactgatcaaattcatgagccgcgaacctaattccttaacttcatttgagaaatcccctaca |
284 |
Q |
| |
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||||||||| ||||||||||||| || || ||||||||||| ||||||||||||| || ||||| || ||||||| || | |||| ||||||| ||| |
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| T |
30759174 |
atcattgtcgaaatatccacactccaaaccaagcccttcactaatcaaattcatgatccttgaacccaactccttaattttagttgaataatccccaaca |
30759273 |
T |
|
| Q |
285 |
cactctctg |
293 |
Q |
| |
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|||| |||| |
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| T |
30759274 |
cactttctg |
30759282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 30746058 - 30746134
Alignment:
| Q |
185 |
atcattgtcaaaatatccacacttcaggccgagcccttcactgatcaaattcatgagccgcgaacctaattccttaa |
261 |
Q |
| |
|
||||||||| ||||||||||||| || || ||||||||||| || |||||||||| || ||||| || ||||||| |
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|
| T |
30746058 |
atcattgtcgaaatatccacactccaaaccaagcccttcactaattaaattcatgatccttgaacccaactccttaa |
30746134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 30767509 - 30767585
Alignment:
| Q |
185 |
atcattgtcaaaatatccacacttcaggccgagcccttcactgatcaaattcatgagccgcgaacctaattccttaa |
261 |
Q |
| |
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||||||||| ||||||||||||| || || ||||||||||| || |||||||||| || ||||| || ||||||| |
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| T |
30767509 |
atcattgtcgaaatatccacactccaaaccaagcccttcactaattaaattcatgatccttgaacccaactccttaa |
30767585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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