View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10120_low_18 (Length: 294)
Name: NF10120_low_18
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10120_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 8410776 - 8411038
Alignment:
Q |
19 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc |
118 |
Q |
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T |
8410776 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc |
8410875 |
T |
 |
Q |
119 |
agtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
8410876 |
agtagagatcactcatattcactgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac |
8410975 |
T |
 |
Q |
219 |
tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactctctttaatct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
T |
8410976 |
tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactccctttaatct |
8411038 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 8041816 - 8041560
Alignment:
Q |
19 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||| ||||||| | |||||| ||||||||||||||||||||| |
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T |
8041816 |
gaaggatctttgcaaacgcgtcactactctcacatatactccgtctccacttacatcttcgtatgaaagatctaagaaatttatgtcttgggttctgtcc |
8041717 |
T |
 |
Q |
119 |
agtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac |
218 |
Q |
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T |
8041716 |
agtagagatcactcatattccctacttaatcttactattgatgcttggatacaggaagatg------aagagctatgtaaactcattaatataaatccgc |
8041623 |
T |
 |
Q |
219 |
tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactctctttaatct |
281 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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|
T |
8041622 |
tactctctttgaaaattaatgggtatggaaggtgtccaaaatctgagttacttcctttaatct |
8041560 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 8036399 - 8036143
Alignment:
Q |
19 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc |
118 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||| |||| | ||||| ||| ||| |||| || | ||||||||||||||||||||| |
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|
T |
8036399 |
gaaggatctttgcaaacgcgtcactactctcacatatactcggtctggagttacatcttcaaatgc---ttttgagcaatttatgtcttgggttctgtcc |
8036303 |
T |
 |
Q |
119 |
agtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac |
218 |
Q |
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| ||||||||||||||||||| |||||||||||||||||||||||||||| | | | ||||||||| ||||| |||||||||||||||||||||| |
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T |
8036302 |
aatagagatcactcatattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaaga---gctatataaactcattaatataaatccac |
8036206 |
T |
 |
Q |
219 |
tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactctctttaatct |
281 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
T |
8036205 |
tactctctttgaaaattaatgggtatgggaagtgtccaaaatctgagttactccctttaatct |
8036143 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 9139003 - 9138757
Alignment:
Q |
19 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc |
118 |
Q |
|
|
|||||||||||||||| |||||||||||||||||||||||||| | ||| ||||| |||| |||| |||||| || | |||||||||||||||||||| |
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|
T |
9139003 |
gaaggatctttgcaaatgcctcactactctcacatatactccggttttacttacatcttcgaatgatagttttgagcaatttatgtcttgggttctgtcg |
9138904 |
T |
 |
Q |
119 |
agtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac |
218 |
Q |
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|||||||||||||||| |||| | |||||||||||||| ||||||| || ||| | | |||||||| |||| ||||||||||| |||||||||| |
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T |
9138903 |
agtagagatcactcatcttcactacttaatcttactatccatgcttgtat---ggacggagcggaagaagacctatataaactcattaaaataaatccac |
9138807 |
T |
 |
Q |
219 |
tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagtta |
268 |
Q |
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| ||||||||||||||| |||||||| |||||||||||||||||||||| |
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T |
9138806 |
ttctctctttgaaaatttttgggtatgcaaagtgtccaaaatctgagtta |
9138757 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 8416429 - 8416567
Alignment:
Q |
19 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc |
118 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| || | | | |||||| ||||||||||||||||||||| |
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|
T |
8416429 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtctctatttacatcttcgtattatgggtataagaaatttatgtcttgggttctgtcc |
8416528 |
T |
 |
Q |
119 |
agtagagatcactcatattcattgcttaatcttactatt |
157 |
Q |
|
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| ||||||||| |||||||| | |||||||| |||||| |
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|
T |
8416529 |
attagagatcattcatattccctacttaatctaactatt |
8416567 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 8359510 - 8359437
Alignment:
Q |
84 |
aaagttttaagaactttatgtcttgggttctgtccagtagagatcactcatattcattgcttaatcttactatt |
157 |
Q |
|
|
|||||||||||||||||| |||||||||| ||| |||||||||||||||| ||| | ||||||||||||||| |
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|
T |
8359510 |
aaagttttaagaactttagctcttgggttcggtctagtagagatcactcatgttccctacttaatcttactatt |
8359437 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8356517 - 8356472
Alignment:
Q |
19 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtct |
64 |
Q |
|
|
|||||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
T |
8356517 |
gaaggatctttgcaaacgcctccctattctcacatatattccgtct |
8356472 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 8403725 - 8403769
Alignment:
Q |
19 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtc |
63 |
Q |
|
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|||||||||||||||||| |||||||||||| |||||| |||||| |
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|
T |
8403725 |
gaaggatctttgcaaacgtctcactactctcgcatatattccgtc |
8403769 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 8403783 - 8403831
Alignment:
Q |
86 |
agttttaagaactttatgtcttgggttctgtccagtagagatcactcat |
134 |
Q |
|
|
||||||||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
T |
8403783 |
agttttaagaactttcagtcttgggttctgtctagtagagatcaatcat |
8403831 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 8356464 - 8356391
Alignment:
Q |
84 |
aaagttttaagaactttatgtcttgggttctgtccagtagagatcactcatattcattgcttaatcttactatt |
157 |
Q |
|
|
||||||||||||||||| |||||||||||||| |||||||||| |||| ||| | || |||||||||||| |
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|
T |
8356464 |
aaagttttaagaacttttattcttgggttctgtcttgtagagatcattcatgttccctactaaatcttactatt |
8356391 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 8359563 - 8359526
Alignment:
Q |
19 |
gaaggatctttgcaaacgcctcactactctcacatata |
56 |
Q |
|
|
|||||||||||||||||| ||| ||||||||||||||| |
|
|
T |
8359563 |
gaaggatctttgcaaacgtctccctactctcacatata |
8359526 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 33083958 - 33084155
Alignment:
Q |
35 |
cgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtccagtagagatcactcat |
134 |
Q |
|
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||||||| ||||||||||||||||||||| | | ||||| || | | | |||||||| || |||||||||||| |||||||||||||||||||||| | |
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|
T |
33083958 |
cgcctcataactctcacatatactccgtcttttcttacatctttgattaatagttttaataaatttatgtcttggattctgtccagtagagatcactcct |
33084057 |
T |
 |
Q |
135 |
attcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccactactctctttgaaaat |
234 |
Q |
|
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|||| | |||||||||||| || ||| |||||| | | |||| ||| ||||| |||||| |||| ||||||||||| |||||||||||||| |
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|
T |
33084058 |
gttcactacttaatcttactgttgatggttggatgctg---------gaaggagacctatgtaaactcgttaaaataaatccacttctctctttgaaaat |
33084148 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 5476322 - 5476422
Alignment:
Q |
86 |
agttttaagaactttatgtcttgggttctgtccagtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaag |
185 |
Q |
|
|
|||||||||||||||| ||||||||||||||| ||||||||||| |||| |||| || |||||||||||| || || | | ||||||| |||||||| |
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|
T |
5476322 |
agttttaagaactttaagtcttgggttctgtctagtagagatcaatcatgttcactgtggaatcttactattgatactcagtttcaggaaggtgaagaag |
5476421 |
T |
 |
Q |
186 |
a |
186 |
Q |
|
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| |
|
|
T |
5476422 |
a |
5476422 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 5476264 - 5476308
Alignment:
Q |
19 |
gaaggatctttgcaaacgcctcactactctcacatatactccgtc |
63 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
T |
5476264 |
gaaggatctttgcaaacgtctcactactctcacatatattccgtc |
5476308 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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