View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10120_low_18 (Length: 294)

Name: NF10120_low_18
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10120_low_18
NF10120_low_18
[»] chr4 (11 HSPs)
chr4 (19-281)||(8410776-8411038)
chr4 (19-281)||(8041560-8041816)
chr4 (19-281)||(8036143-8036399)
chr4 (19-268)||(9138757-9139003)
chr4 (19-157)||(8416429-8416567)
chr4 (84-157)||(8359437-8359510)
chr4 (19-64)||(8356472-8356517)
chr4 (19-63)||(8403725-8403769)
chr4 (86-134)||(8403783-8403831)
chr4 (84-157)||(8356391-8356464)
chr4 (19-56)||(8359526-8359563)
[»] chr2 (1 HSPs)
chr2 (35-241)||(33083958-33084155)
[»] chr7 (2 HSPs)
chr7 (86-186)||(5476322-5476422)
chr7 (19-63)||(5476264-5476308)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 8410776 - 8411038
Alignment:
19 gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8410776 gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc 8410875  T
119 agtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8410876 agtagagatcactcatattcactgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac 8410975  T
219 tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactctctttaatct 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
8410976 tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactccctttaatct 8411038  T

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Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 8041816 - 8041560
Alignment:
19 gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  || ||||| |||| ||||||| | |||||| |||||||||||||||||||||    
8041816 gaaggatctttgcaaacgcgtcactactctcacatatactccgtctccacttacatcttcgtatgaaagatctaagaaatttatgtcttgggttctgtcc 8041717  T
119 agtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac 218  Q
    ||||||||||||||||||||  | ||||||||||||||| |||||||||||||||||||||      |||||||||| |||||||||||||||||||| |    
8041716 agtagagatcactcatattccctacttaatcttactattgatgcttggatacaggaagatg------aagagctatgtaaactcattaatataaatccgc 8041623  T
219 tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactctctttaatct 281  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||    
8041622 tactctctttgaaaattaatgggtatggaaggtgtccaaaatctgagttacttcctttaatct 8041560  T

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Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 8036399 - 8036143
Alignment:
19 gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc 118  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||  |  ||||| |||  |||    |||| || | |||||||||||||||||||||    
8036399 gaaggatctttgcaaacgcgtcactactctcacatatactcggtctggagttacatcttcaaatgc---ttttgagcaatttatgtcttgggttctgtcc 8036303  T
119 agtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac 218  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||| |  |  | |||||||||   |||||  ||||||||||||||||||||||    
8036302 aatagagatcactcatattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaaga---gctatataaactcattaatataaatccac 8036206  T
219 tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactctctttaatct 281  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
8036205 tactctctttgaaaattaatgggtatgggaagtgtccaaaatctgagttactccctttaatct 8036143  T

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Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 9139003 - 9138757
Alignment:
19 gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||  | ||| ||||| |||| |||| |||||| || | ||||||||||||||||||||     
9139003 gaaggatctttgcaaatgcctcactactctcacatatactccggttttacttacatcttcgaatgatagttttgagcaatttatgtcttgggttctgtcg 9138904  T
119 agtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccac 218  Q
    |||||||||||||||| |||| | ||||||||||||||  ||||||| ||   ||| |  |  |||||||| ||||  ||||||||||| ||||||||||    
9138903 agtagagatcactcatcttcactacttaatcttactatccatgcttgtat---ggacggagcggaagaagacctatataaactcattaaaataaatccac 9138807  T
219 tactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagtta 268  Q
    | |||||||||||||||  |||||||| ||||||||||||||||||||||    
9138806 ttctctctttgaaaatttttgggtatgcaaagtgtccaaaatctgagtta 9138757  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 8416429 - 8416567
Alignment:
19 gaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtcc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| |||| || |  | | |||||| |||||||||||||||||||||    
8416429 gaaggatctttgcaaacgcctcactactctcacatatactccgtctctatttacatcttcgtattatgggtataagaaatttatgtcttgggttctgtcc 8416528  T
119 agtagagatcactcatattcattgcttaatcttactatt 157  Q
    | ||||||||| ||||||||  | |||||||| ||||||    
8416529 attagagatcattcatattccctacttaatctaactatt 8416567  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 8359510 - 8359437
Alignment:
84 aaagttttaagaactttatgtcttgggttctgtccagtagagatcactcatattcattgcttaatcttactatt 157  Q
    ||||||||||||||||||  |||||||||| ||| |||||||||||||||| |||  | |||||||||||||||    
8359510 aaagttttaagaactttagctcttgggttcggtctagtagagatcactcatgttccctacttaatcttactatt 8359437  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8356517 - 8356472
Alignment:
19 gaaggatctttgcaaacgcctcactactctcacatatactccgtct 64  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||||    
8356517 gaaggatctttgcaaacgcctccctattctcacatatattccgtct 8356472  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 8403725 - 8403769
Alignment:
19 gaaggatctttgcaaacgcctcactactctcacatatactccgtc 63  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||    
8403725 gaaggatctttgcaaacgtctcactactctcgcatatattccgtc 8403769  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 8403783 - 8403831
Alignment:
86 agttttaagaactttatgtcttgggttctgtccagtagagatcactcat 134  Q
    |||||||||||||||  ||||||||||||||| ||||||||||| ||||    
8403783 agttttaagaactttcagtcttgggttctgtctagtagagatcaatcat 8403831  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 8356464 - 8356391
Alignment:
84 aaagttttaagaactttatgtcttgggttctgtccagtagagatcactcatattcattgcttaatcttactatt 157  Q
    |||||||||||||||||   ||||||||||||||  |||||||||| |||| |||  | || ||||||||||||    
8356464 aaagttttaagaacttttattcttgggttctgtcttgtagagatcattcatgttccctactaaatcttactatt 8356391  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 8359563 - 8359526
Alignment:
19 gaaggatctttgcaaacgcctcactactctcacatata 56  Q
    |||||||||||||||||| ||| |||||||||||||||    
8359563 gaaggatctttgcaaacgtctccctactctcacatata 8359526  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 33083958 - 33084155
Alignment:
35 cgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtccagtagagatcactcat 134  Q
    |||||||  ||||||||||||||||||||| | | ||||| || |  | | |||||||| || |||||||||||| |||||||||||||||||||||| |    
33083958 cgcctcataactctcacatatactccgtcttttcttacatctttgattaatagttttaataaatttatgtcttggattctgtccagtagagatcactcct 33084057  T
135 attcattgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccactactctctttgaaaat 234  Q
     |||| | |||||||||||| || ||| |||||| | |         |||| ||| ||||| |||||| |||| ||||||||||| ||||||||||||||    
33084058 gttcactacttaatcttactgttgatggttggatgctg---------gaaggagacctatgtaaactcgttaaaataaatccacttctctctttgaaaat 33084148  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 5476322 - 5476422
Alignment:
86 agttttaagaactttatgtcttgggttctgtccagtagagatcactcatattcattgcttaatcttactattaatgcttggatacaggaagatgaagaag 185  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| |||| |||| ||   |||||||||||| || ||  | | ||||||| ||||||||    
5476322 agttttaagaactttaagtcttgggttctgtctagtagagatcaatcatgttcactgtggaatcttactattgatactcagtttcaggaaggtgaagaag 5476421  T
186 a 186  Q
    |    
5476422 a 5476422  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 5476264 - 5476308
Alignment:
19 gaaggatctttgcaaacgcctcactactctcacatatactccgtc 63  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
5476264 gaaggatctttgcaaacgtctcactactctcacatatattccgtc 5476308  T

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