View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10120_low_19 (Length: 285)
Name: NF10120_low_19
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 105 - 275
Target Start/End: Complemental strand, 41153310 - 41153140
Alignment:
| Q |
105 |
ctccctttggttgtttggacactgttatccaatccattcgaacaaagtgattcgtatgtttgcaaaacaggctcattcaattaggtcgagatcatttcat |
204 |
Q |
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| T |
41153310 |
ctccctttggttgtttggacactgttatccaatccattcgaacaaagtgattcgtatgtttgcaaaacaggctcattcaattaggtcgagatcatttcat |
41153211 |
T |
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| Q |
205 |
ttaatgggcatcttcatttgattagaggactatctatagactcttttgttcctcaagtctctcctcctttg |
275 |
Q |
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| T |
41153210 |
ttaatggacatcttcatttgattagaggactatctatagactcttttgttcctgaagtctctcctcctttg |
41153140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41153366 - 41153322
Alignment:
| Q |
1 |
ttcttatatttagtgtgtgttcttgtcattagatcctttgaagaa |
45 |
Q |
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| T |
41153366 |
ttcttatatttagtgtgtgttcttgtcattagatcctttgaagaa |
41153322 |
T |
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