View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10120_low_2 (Length: 479)
Name: NF10120_low_2
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 20072633 - 20073093
Alignment:
| Q |
1 |
agtgactcggaaatgcatcaagcagaaagagggagttgtctattactcaacaaaactctttggtgtatattgaagtgagggagaatttgataaggtctga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20072633 |
agtgacttggaaatgcatcaagcagaaagagggagttgtctattactcaatagaactctttggta---attgaagtgagggagaatttgataaggtctga |
20072729 |
T |
|
| Q |
101 |
ttaggaccgtcttgaaaacaagtaaggaacttgaccctaaccccgatatgtcggtagaacctacactataaaagttattgactcaagaacaaaggaaaag |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20072730 |
ttaggaccgtcttgaaaacaggtaaggaacttgaccctaaccccgatatgtcggtagaatctacactataaaagttattgactcaagaacaaaggaaaag |
20072829 |
T |
|
| Q |
201 |
ttctcacaatattgaaaaaattaattaatcttcaaattatgagttgagaagtacatgagtttcttatttacctaaacttgatatactaaaaataatttta |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20072830 |
ttctcacaatatagaaaaaattaattaatcttcaaattatgagttgagaagtacatgagtttcttatttacctaaacttgaaatactaaaaataatttta |
20072929 |
T |
|
| Q |
301 |
agattaattatactcgcaaaatttgaaacaaa-tttaaaaattgagacggaaaatatactcgcaaaattttattatatagaataacacgttttactttgg |
399 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20072930 |
agattaattatactcgcaaaaattgaaacaaattttaaaaattgagacggaaaatatactcgcaaaattttattatataggataacacgttttactttgg |
20073029 |
T |
|
| Q |
400 |
catatgacaaagagaatgcttatgcaaccattacgagcagaaagtcagatctatatagttatgg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20073030 |
catatgacaaagagaatgcttatgcaaccattacgagcagaaagtcagatgtatatagttatgg |
20073093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 270
Target Start/End: Complemental strand, 26047789 - 26047644
Alignment:
| Q |
132 |
tgaccctaaccccgatatgtcggtagaacctacactataaaagttattgactcaagaacaaaggaaaagttctcacaatattgaaa------aaattaat |
225 |
Q |
| |
|
||||||||||| ||| || |||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||| | |||| ||||| || |
|
|
| T |
26047789 |
tgaccctaaccgcgacctgccggtagaaccaacactataaaagttcttgacccaagaacaaatgaaaagttctcacaaagtagaaaactctcaaattgat |
26047690 |
T |
|
| Q |
226 |
taa-tcttcaaattatgagttgagaagtacatgagtttcttattta |
270 |
Q |
| |
|
||| ||||||||||| || ||||||||||||||| |||||||||| |
|
|
| T |
26047689 |
taattcttcaaattaagatttgagaagtacatgaacttcttattta |
26047644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 26048490 - 26048370
Alignment:
| Q |
156 |
agaacctacactataaaagttattgactcaagaacaaaggaaaagttctcacaatattgaaa-----aaattaattaa-tcttcaaattatgagttgaga |
249 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |||||| |||||| || |||| ||||| ||||| |||||||||| | | |||||| |
|
|
| T |
26048490 |
agaaccaacactataaaagttattgacccaagaacaaagaaaaagtattcacaaaatagaaaacctcaaattgattaattcttcaaattgtaatttgaga |
26048391 |
T |
|
| Q |
250 |
agtacatgagtttcttattta |
270 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26048390 |
agtacatgagtttcttattta |
26048370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 270
Target Start/End: Complemental strand, 21361936 - 21361825
Alignment:
| Q |
163 |
acactataaaagttattgactcaagaacaaaggaaaagttctcacaatattgaaa----aaattaattaatcttcaaattatgagttgagaagtacatga |
258 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||||||||| |||| |||| ||||||||||||||| | | ||||||||||||||| |
|
|
| T |
21361936 |
acactataaaatttcttgatccaagaacaaaggaaaagttctcacaataaagaaagctcaaatatattaatcttcaaattgttatttgagaagtacatga |
21361837 |
T |
|
| Q |
259 |
gtttcttattta |
270 |
Q |
| |
|
| |||||||||| |
|
|
| T |
21361836 |
ggttcttattta |
21361825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 270
Target Start/End: Original strand, 16934563 - 16934685
Alignment:
| Q |
152 |
cggtagaacctacactataaaagttattgactcaagaacaaaggaaaagttctcacaatattgaaa----aaattaattaatcttcaaattatgagttga |
247 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||| |||||||||||||||| |||||||||| |||| |||| ||||||||||||||| ||| |||| |
|
|
| T |
16934563 |
cggtagaaccaacactaaaaaagttcttgacccaagaacaaaggaaaaactctcacaatagagaaaactcaaatatattaatcttcaaattgtgatttga |
16934662 |
T |
|
| Q |
248 |
gaagtacatgagtttcttattta |
270 |
Q |
| |
|
||| || ||||| |||||||||| |
|
|
| T |
16934663 |
gaattaaatgagcttcttattta |
16934685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 35689378 - 35689453
Alignment:
| Q |
133 |
gaccctaaccccgatatgtcggtagaacctacactataaaagttattgactcaagaacaaaggaaaagttctcacaa |
209 |
Q |
| |
|
|||||||||| ||| || |||||||||| ||||||||||| || || | |||||||||||||||||||||||||| |
|
|
| T |
35689378 |
gaccctaaccgcgacctgccggtagaaccaacactataaaaattcttatc-caagaacaaaggaaaagttctcacaa |
35689453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 35689672 - 35689718
Alignment:
| Q |
224 |
attaatcttcaaattatgagttgagaagtacatgagtttcttattta |
270 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
35689672 |
attaatcttcaaattgtgttttgagaagtacatgagcttcttattta |
35689718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 132 - 270
Target Start/End: Original strand, 35957316 - 35957458
Alignment:
| Q |
132 |
tgaccctaaccccgatatgtcggtagaacctacactataaaagttattgactcaagaacaaaggaaaagttctcacaatattgaaa----aaattaatta |
227 |
Q |
| |
|
||||||||||| ||| || |||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||| |||| |||| |||| |
|
|
| T |
35957316 |
tgaccctaaccgcgacctgccggtagaaccaacactataaaagttcttgacccaagaacaaaggaaaagctctcacaataaagaaaactcaaatatatta |
35957415 |
T |
|
| Q |
228 |
atcttcaaattatgagttgagaagtacatgagtttcttattta |
270 |
Q |
| |
|
||||||||||| | |||||||||||||||| |||||||||| |
|
|
| T |
35957416 |
atcttcaaattgtcttttgagaagtacatgagcttcttattta |
35957458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 40203761 - 40203878
Alignment:
| Q |
158 |
aacctacactataaaagttattgactcaagaacaaaggaaaagttctcacaatattgaaa------aaattaattaa-tcttcaaattatgagttgagaa |
250 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||||||| ||||||| |||| | ||| ||||| |||||||||||||| || |||| |
|
|
| T |
40203761 |
aaccaacactataaaagttcttgacccaagaacaaaggaaaagtttccacaata--gaaaactcttatattgattaattcttcaaattatgattttagaa |
40203858 |
T |
|
| Q |
251 |
gtacatgagtttcttattta |
270 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
40203859 |
gtacatgagcttcttattta |
40203878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 15531389 - 15531435
Alignment:
| Q |
224 |
attaatcttcaaattatgagttgagaagtacatgagtttcttattta |
270 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||||| |||||||||| |
|
|
| T |
15531389 |
attaatcttcaaattgtgatttgagaattacatgagcttcttattta |
15531435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 35374873 - 35374977
Alignment:
| Q |
155 |
tagaacctacactataaaagttattgactcaagaacaaaggaaaagttctcacaatattgaaa----aaattaattaatcttcaaattatgagttgagaa |
250 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| | | | ||||||| |
|
|
| T |
35374873 |
tagaaccaacactataaaagttcttggaccaagaacaaagaaaaagttctcacaatattgaaagctcaaattgattaatcttcaaagtgtcatttgagaa |
35374972 |
T |
|
| Q |
251 |
gtaca |
255 |
Q |
| |
|
||||| |
|
|
| T |
35374973 |
gtaca |
35374977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 5994222 - 5994278
Alignment:
| Q |
105 |
gaccgtcttgaaaacaagtaaggaacttgaccctaaccccgatatgtcggtagaacc |
161 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
5994222 |
gaccgtcttgaaaacaggtaaggaacttgaccctaaccgcgacctgccggtagaacc |
5994278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 5994371 - 5994424
Alignment:
| Q |
154 |
gtagaacctacactataaaagttattgactcaagaacaaaggaaaagttctcaca |
208 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
5994371 |
gtagaaccaaca-tataaaagttcttgacacaagaacaaaggaaaagttctcaca |
5994424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University