View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10120_low_22 (Length: 251)
Name: NF10120_low_22
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4476352 - 4476116
Alignment:
| Q |
1 |
tgcttgttttcagcgccttaactaacattttatgggtcttaggtcaagtttgagnnnnnnnncatcttaaatacttcataattatttttattgataaacg |
100 |
Q |
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| T |
4476352 |
tgcttgtgttcagcgccgtaactaacattttataggtcttatgtcaagtttgagaaaaaaagcatcttaaatacttcataattatttttattgataaacg |
4476253 |
T |
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| Q |
101 |
atgaatgtgacacacattaattatagcagttgacatcttaactatatatgctagaaccctaagttatcataatacgatgttttgaaattcaagc-atggt |
199 |
Q |
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| T |
4476252 |
atgaatgtgacacactttaattataacagttgacatcttaactata----ctagaaccctaagttatcataatattatgttttaaaattcaagctatggt |
4476157 |
T |
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| Q |
200 |
gacatcccaaaacattgtgtgtcaaatgcacctcttcctat |
240 |
Q |
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| T |
4476156 |
gacatcccaaaacattgtgtgtcaaatcaacctcttcctat |
4476116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 4129822 - 4129973
Alignment:
| Q |
84 |
atttttattgataaacgatgaatgtgacacacattaattatagcagttgacatcttaactatatatgctagaaccctaagttatcataatacgatgtttt |
183 |
Q |
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| T |
4129822 |
atttttttcgataaacaatgaatgtgacacacaataatcatggcggttgacatctcaactata-atg---gcaccccaagttaccataatacgatctttt |
4129917 |
T |
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| Q |
184 |
gaaattcaagcatggtgacatcccaaaacattgtgtgtcaaatgcacctcttcctatg |
241 |
Q |
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| T |
4129918 |
gagatgc--tcgtgttgatatcctaaaacaacgtgtgtcaaatgcacctcatcctatg |
4129973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 6533641 - 6533609
Alignment:
| Q |
161 |
aagttatcataatacgatgttttgaaattcaag |
193 |
Q |
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| T |
6533641 |
aagtcatcataatacgatgttttgaaattcaag |
6533609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 27189874 - 27189805
Alignment:
| Q |
161 |
aagttatcataatacgatgttttgaaatt-caagcatggtgacatcccaaaacattgtgtgtcaaatgca |
229 |
Q |
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| T |
27189874 |
aagttatcataataccatgttttgaaattccaactatgctaatatcgcaaaacattgtgtgtcaaatgca |
27189805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 19694249 - 19694176
Alignment:
| Q |
161 |
aagttatcataatacgatgttttgaaattcaagc-atggtgacatcccaaaacattgtgtgtcaaatgcacctc |
233 |
Q |
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| T |
19694249 |
aagttatcataatacgatgttttgacatcccagctatgctggcatcccaaaatatcgtgtgtcaaatacacctc |
19694176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 2986246 - 2986309
Alignment:
| Q |
83 |
tatttttattgataaacgatgaatgtgacacacattaattatagcagttgacatcttaactata |
146 |
Q |
| |
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||||||| || ||||||||||||||| | |||| |||||||| || |||||||||| ||||||| |
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| T |
2986246 |
tatttttttttataaacgatgaatgttatacacgttaattatggcggttgacatctcaactata |
2986309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 29530892 - 29530964
Alignment:
| Q |
169 |
ataatacgatgttttgaaattcaagc-atggtgacatcccaaaacattgtgtgtcaaatgcacctcttcctat |
240 |
Q |
| |
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|||||||||| |||||| |||| ||| ||| || || ||||||| |||||||||||||| |||||| |||||| |
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| T |
29530892 |
ataatacgatattttgacattccagctatgctggcaccccaaaatattgtgtgtcaaatacacctcatcctat |
29530964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 38054042 - 38053970
Alignment:
| Q |
169 |
ataatacgatgttttgaaattcaagc-atggtgacatcccaaaacattgtgtgtcaaatgcacctcttcctat |
240 |
Q |
| |
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|||||||||| |||||| || ||||| ||| || || ||||||| |||||||||||||| |||||| |||||| |
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| T |
38054042 |
ataatacgatattttgacatccaagctatgctggcaccccaaaatattgtgtgtcaaatacacctcatcctat |
38053970 |
T |
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