View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10120_low_23 (Length: 250)
Name: NF10120_low_23
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39695067 - 39695307
Alignment:
| Q |
1 |
aaaataattggaatcctaccattgtggtcttcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatgg |
100 |
Q |
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| T |
39695067 |
aaaataattggaatcctaccattgtggtcttcaagtatattcttagcaactccaatagcaatccaaagttgcttggttgtacttcaagctttagtcatgg |
39695166 |
T |
|
| Q |
101 |
atcgttcattaggaccccattttaaaatcccagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695167 |
atcgttcattaggaccccattttaaaatcccagctagttctgtttctgttatagtcttgatatcagcacccattttcctcacatttcttgacagagtgct |
39695266 |
T |
|
| Q |
201 |
attaccaggttggcataaggttaccaggaaaatgcctatgc |
241 |
Q |
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| T |
39695267 |
attaccaggttggcataaggttaccaggaaaatgcctatgc |
39695307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 39935024 - 39934824
Alignment:
| Q |
25 |
tggtcttcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccatttta |
124 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
39935024 |
tggtcttcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcggtctttaggaccccatttta |
39934925 |
T |
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| Q |
125 |
aaatcccagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttac |
224 |
Q |
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| T |
39934924 |
aaatcccagctagttttgtttctgttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattac |
39934825 |
T |
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| Q |
225 |
c |
225 |
Q |
| |
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| |
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| T |
39934824 |
c |
39934824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 39703986 - 39704219
Alignment:
| Q |
8 |
ttggaatcctaccattgtggtcttcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcgttc |
107 |
Q |
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|||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| || |
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| T |
39703986 |
ttggaatcctaccactatggagttcaagtatattcttagcaactccaatagcaatccaaagtagtgtgacggtacttcaagctttagccatggatcgctc |
39704085 |
T |
|
| Q |
108 |
attaggaccccattttaaaatcccagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgctattacca |
207 |
Q |
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| T |
39704086 |
attaggaccccatttcaaaattccagctggttctgtttctgttatagtcataatatcaacatccattttcctcacctttcttgacagagtgctattgcca |
39704185 |
T |
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| Q |
208 |
ggttggcataaggttaccaggaaaatgcctatgc |
241 |
Q |
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||||||||||| |||| | |||| |||||||| |
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| T |
39704186 |
tgttggcataagattactggaaaaacgcctatgc |
39704219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39929396 - 39929170
Alignment:
| Q |
1 |
aaaataattggaatcctaccattgtggtcttcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatgg |
100 |
Q |
| |
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|||||| ||||||| ||||||| ||| |||||||| ||||| || ||| |||||||| ||| |||| ||| || ||||||||||||||||||||| |
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| T |
39929396 |
aaaatagttggaatattaccattatggacttcaagtctattcctatcaattccaatagtaatgcaaatggacttcattatacttcaagctttagtcatgg |
39929297 |
T |
|
| Q |
101 |
atcgttcattaggaccccattttaaaatcccagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgct |
200 |
Q |
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||||||| |||||| ||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
39929296 |
atcgttctttaggataccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattttcctcacttttcttgacagggtgct |
39929197 |
T |
|
| Q |
201 |
attaccaggttggcataaggttaccag |
227 |
Q |
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||| ||| ||||||||||||||||||| |
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| T |
39929196 |
attgccaagttggcataaggttaccag |
39929170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 38062001 - 38061862
Alignment:
| Q |
77 |
ttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttatt---gtcttaatatcagcacccat |
173 |
Q |
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|||||||||||| |||| ||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||| || ||||||||| || | || |
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| T |
38062001 |
ttgtacttcaagatttaatcatggatcgttctgtaggatctcattttaaaatcccagctggttctgtttctgttattatagtgttaatatcaacatctat |
38061902 |
T |
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| Q |
174 |
tttcctcacatttcttgacagagtgctattaccaggttgg |
213 |
Q |
| |
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||||||||| ||||||||||||||| |||| ||||||||| |
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| T |
38061901 |
tttcctcacctttcttgacagagtgttattgccaggttgg |
38061862 |
T |
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