View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10120_low_26 (Length: 241)
Name: NF10120_low_26
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 39695023 - 39694927
Alignment:
| Q |
1 |
gattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatatagatcagcacattgtta |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695023 |
gattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatatagatcagcacattgtta |
39694927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 39694896 - 39694793
Alignment:
| Q |
122 |
gcttcaagtatattcttctttcattgcttaagtatctagaacttctagtttctattagaaaaagcataactaacaaatgaaacaatcaagccaataaaag |
221 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39694896 |
gcttcaagtatattctcctttcattgcttaagtatctggaacttctagtttctattagaaaaagcataactaacaaatgaaacaatcaagccaataaaag |
39694797 |
T |
|
| Q |
222 |
ttgg |
225 |
Q |
| |
|
|||| |
|
|
| T |
39694796 |
ttgg |
39694793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39703935 - 39703852
Alignment:
| Q |
1 |
gattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatatagat |
84 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
39703935 |
gatttcttaattgagccatctgattttaggtctgcatcagttatcagagttgcgcgattgaagaacctgcatttgcatatagat |
39703852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 39929440 - 39929531
Alignment:
| Q |
1 |
gattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatatagatcagcacat |
92 |
Q |
| |
|
||||| |||| || ||||| ||| | ||||||||||||||||||||||| || || ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
39929440 |
gatttcttaattgtgccatttgagtgtaggtctgcatcagttattagagcggcacggttgaaaaacctgcatttgcatatcgatcagcacat |
39929531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 38180859 - 38180949
Alignment:
| Q |
7 |
ttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatatagatcagcacattgtta |
97 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||||||| ||| |||||||| ||| | |||||||||||| ||||| ||||||||| |
|
|
| T |
38180859 |
ttaacttagccatctgagtttaggtctgcatcaattattagagttgcacgattgaataactttcatttgcatatatatcagtacattgtta |
38180949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 38062127 - 38062191
Alignment:
| Q |
7 |
ttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgca |
71 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
38062127 |
ttaactgagccatctgagtttaggtctgcatcagttattaaagctgcacgattgaagaacctgca |
38062191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University