View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF10120_low_31 (Length: 220)
Name: NF10120_low_31
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 32024807 - 32024990
Alignment:
| Q | 17 | gaagacaaaccaaacatacacttagtttgttcgttgacctttgataatctttaataatgaggaaaatagatatgtgagtctcttttgggttgaactgtgt | 116 | Q |
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| T | 32024807 | gaagacaaaccaaacatacacttagtttgtt----gacctttgataatctttaataatgaggaaaatagatatgtgagtctcttttgggttgaactgtgt | 32024902 | T |
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| Q | 117 | gattaaatggaattttgatgatctgtgtgtttgacttcttttgggttgttttctatttaatttgttgatttgggtttatgtttgatgt | 204 | Q |
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| T | 32024903 | gattaaatggaattttgatgatctgtgtgtttgacttcttttgggttgttttctatttaatttgttgatttgggtttatgtttgatgt | 32024990 | T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 32026304 - 32026389
Alignment:
| Q | 86 | atatgtgagtctcttttgggttgaactgtgtgattaaatggaattttgatgatctgtgtgtttgacttcttttgggttgttttcta | 171 | Q |
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| T | 32026304 | atatgtgaatctcttttggatttaagtgtatgagtaaatgaaattttgatgatctgtgtgtttgacttcattttggttgttttcta | 32026389 | T |
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