View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10120_low_4 (Length: 454)

Name: NF10120_low_4
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10120_low_4
NF10120_low_4
[»] chr3 (40 HSPs)
chr3 (12-204)||(3656534-3656726)
chr3 (3-287)||(2206993-2207305)
chr3 (3-204)||(29350830-29351048)
chr3 (3-86)||(46964601-46964684)
chr3 (3-86)||(20520546-20520629)
chr3 (3-86)||(3419578-3419661)
chr3 (3-74)||(7570651-7570722)
chr3 (7-86)||(12965310-12965389)
chr3 (3-74)||(23660899-23660970)
chr3 (3-74)||(23665558-23665629)
chr3 (3-74)||(24037806-24037877)
chr3 (3-74)||(27709521-27709592)
chr3 (3-83)||(757790-757870)
chr3 (352-400)||(55432221-55432269)
chr3 (347-403)||(18472995-18473053)
chr3 (3-74)||(55326367-55326438)
chr3 (352-403)||(20520955-20521008)
chr3 (347-400)||(55326766-55326821)
chr3 (347-403)||(757413-757471)
chr3 (347-403)||(3656306-3656364)
chr3 (347-403)||(7570264-7570322)
chr3 (347-403)||(27709920-27709975)
chr3 (347-403)||(14437739-14437797)
chr3 (352-403)||(20175387-20175437)
chr3 (350-403)||(2206880-2206931)
chr3 (352-403)||(7860702-7860755)
chr3 (207-258)||(29351070-29351123)
chr3 (353-403)||(3426068-3426120)
chr3 (25-74)||(35456397-35456446)
chr3 (132-204)||(12565970-12566042)
chr3 (132-204)||(13155889-13155961)
chr3 (132-204)||(13260373-13260445)
chr3 (352-400)||(12970860-12970910)
chr3 (347-403)||(23660538-23660596)
chr3 (347-403)||(23665170-23665228)
chr3 (81-115)||(13155995-13156029)
chr3 (347-397)||(29351216-29351268)
chr3 (347-401)||(39774876-39774932)
chr3 (352-403)||(12964933-12964985)
chr3 (30-86)||(12971225-12971281)
[»] chr1 (29 HSPs)
chr1 (6-206)||(23192112-23192329)
chr1 (25-204)||(16036230-16036427)
chr1 (3-206)||(40166553-40166773)
chr1 (3-209)||(39587641-39587864)
chr1 (3-128)||(7882575-7882700)
chr1 (24-204)||(12260601-12260797)
chr1 (1-86)||(38621295-38621380)
chr1 (3-86)||(19798423-19798506)
chr1 (3-87)||(16834064-16834148)
chr1 (3-74)||(25844344-25844415)
chr1 (347-403)||(10136314-10136372)
chr1 (347-403)||(16036595-16036653)
chr1 (3-86)||(16649058-16649140)
chr1 (7-86)||(33300666-33300745)
chr1 (3-74)||(39200196-39200267)
chr1 (347-403)||(12260965-12261022)
chr1 (347-403)||(25844745-25844803)
chr1 (133-204)||(46697073-46697143)
chr1 (3-70)||(47450663-47450730)
chr1 (352-403)||(16648678-16648732)
chr1 (348-403)||(39586130-39586184)
chr1 (25-86)||(20107961-20108023)
chr1 (86-147)||(46697011-46697070)
chr1 (353-403)||(38622184-38622236)
chr1 (347-403)||(23191888-23191944)
chr1 (212-251)||(8138472-8138511)
chr1 (368-403)||(39199816-39199851)
chr1 (352-400)||(51040573-51040623)
chr1 (30-87)||(10999315-10999372)
[»] chr4 (50 HSPs)
chr4 (3-204)||(19107200-19107418)
chr4 (3-204)||(19102570-19102787)
chr4 (6-204)||(8029630-8029845)
chr4 (3-206)||(47244732-47244953)
chr4 (3-86)||(32220990-32221073)
chr4 (3-86)||(16421631-16421714)
chr4 (3-86)||(31274103-31274186)
chr4 (3-86)||(19540602-19540685)
chr4 (3-86)||(31269614-31269697)
chr4 (3-74)||(33462799-33462870)
chr4 (3-86)||(37259287-37259370)
chr4 (140-204)||(12875161-12875225)
chr4 (3-86)||(37263987-37264070)
chr4 (3-73)||(33468439-33468509)
chr4 (3-89)||(48276078-48276163)
chr4 (352-396)||(5925853-5925897)
chr4 (352-396)||(27183229-27183273)
chr4 (347-403)||(8694702-8694760)
chr4 (3-86)||(12823311-12823394)
chr4 (347-403)||(19107567-19107625)
chr4 (352-403)||(2820786-2820839)
chr4 (352-403)||(16422040-16422093)
chr4 (352-403)||(51698923-51698976)
chr4 (353-403)||(12822959-12823011)
chr4 (1-65)||(42758300-42758364)
chr4 (347-403)||(31274503-31274561)
chr4 (347-403)||(37258912-37258970)
chr4 (347-403)||(37263612-37263670)
chr4 (3-74)||(51698511-51698582)
chr4 (3-86)||(55252255-55252338)
chr4 (30-139)||(12875033-12875143)
chr4 (348-403)||(19102956-19103013)
chr4 (352-403)||(32220613-32220666)
chr4 (352-403)||(55252638-55252691)
chr4 (368-403)||(8029384-8029419)
chr4 (368-403)||(13064859-13064894)
chr4 (347-403)||(31728415-31728472)
chr4 (352-403)||(32081214-32081267)
chr4 (362-403)||(28601624-28601665)
chr4 (23-79)||(6137977-6138033)
chr4 (5-65)||(13060052-13060112)
chr4 (347-403)||(48275888-48275943)
chr4 (347-403)||(12875393-12875451)
chr4 (25-87)||(13065226-13065289)
chr4 (3-70)||(19906829-19906896)
chr4 (368-403)||(31766884-31766919)
chr4 (352-403)||(33462406-33462456)
chr4 (347-394)||(5270480-5270529)
chr4 (25-86)||(6943390-6943452)
chr4 (352-390)||(33468064-33468104)
[»] scaffold0011 (3 HSPs)
scaffold0011 (3-146)||(145785-145928)
scaffold0011 (347-403)||(64943-65001)
scaffold0011 (144-204)||(145711-145770)
[»] scaffold0054 (4 HSPs)
scaffold0054 (3-204)||(26045-26262)
scaffold0054 (3-74)||(29765-29836)
scaffold0054 (350-403)||(26433-26488)
scaffold0054 (352-403)||(30171-30224)
[»] chr7 (32 HSPs)
chr7 (5-285)||(4580093-4580386)
chr7 (3-204)||(30258692-30258902)
chr7 (25-206)||(26286430-26286629)
chr7 (24-287)||(13313482-13313772)
chr7 (3-85)||(8268885-8268967)
chr7 (3-92)||(12799976-12800065)
chr7 (3-86)||(42626011-42626094)
chr7 (5-86)||(4930813-4930894)
chr7 (3-74)||(27238740-27238811)
chr7 (347-400)||(26286210-26286265)
chr7 (24-86)||(3046179-3046242)
chr7 (352-403)||(12181801-12181854)
chr7 (352-403)||(42625627-42625680)
chr7 (3-86)||(2595414-2595497)
chr7 (347-403)||(4931212-4931270)
chr7 (347-403)||(13313363-13313421)
chr7 (352-400)||(26342201-26342251)
chr7 (25-123)||(10387742-10387842)
chr7 (347-403)||(4580454-4580512)
chr7 (347-403)||(12257011-12257068)
chr7 (207-287)||(30258924-30259010)
chr7 (352-394)||(3046568-3046612)
chr7 (82-175)||(15233173-15233269)
chr7 (352-392)||(27246608-27246648)
chr7 (368-403)||(3880983-3881018)
chr7 (25-86)||(10392518-10392580)
chr7 (348-403)||(30259252-30259309)
chr7 (352-403)||(44508345-44508398)
chr7 (367-403)||(10392138-10392174)
chr7 (82-175)||(14783144-14783241)
chr7 (32-84)||(16373010-16373062)
chr7 (31-84)||(23319533-23319588)
[»] chr2 (42 HSPs)
chr2 (1-127)||(7737243-7737369)
chr2 (7-205)||(31327346-31327559)
chr2 (54-205)||(31334114-31334280)
chr2 (25-147)||(19577943-19578064)
chr2 (77-204)||(42925945-42926089)
chr2 (132-204)||(28603835-28603907)
chr2 (3-74)||(1934428-1934499)
chr2 (3-74)||(12797516-12797587)
chr2 (352-403)||(19896944-19896995)
chr2 (348-403)||(42925725-42925780)
chr2 (4-74)||(9184852-9184922)
chr2 (347-403)||(9179777-9179835)
chr2 (3-74)||(9180161-9180232)
chr2 (347-403)||(9184468-9184526)
chr2 (347-403)||(18345405-18345463)
chr2 (347-403)||(19891556-19891612)
chr2 (353-393)||(25637824-25637864)
chr2 (347-403)||(30651903-30651961)
chr2 (347-403)||(40846631-40846689)
chr2 (30-83)||(19896636-19896690)
chr2 (352-403)||(25496433-25496486)
chr2 (78-128)||(28603764-28603814)
chr2 (353-403)||(24537072-24537124)
chr2 (3-84)||(25477719-25477800)
chr2 (3-63)||(29678347-29678406)
chr2 (352-403)||(12797923-12797977)
chr2 (347-403)||(17968013-17968070)
chr2 (347-403)||(31329051-31329109)
chr2 (347-403)||(31335772-31335830)
chr2 (207-287)||(42925841-42925923)
chr2 (347-393)||(12361238-12361284)
chr2 (24-74)||(17453049-17453099)
chr2 (352-403)||(29678672-29678725)
chr2 (24-86)||(30651524-30651586)
chr2 (161-203)||(44630727-44630769)
chr2 (347-393)||(15446341-15446389)
chr2 (347-392)||(44630508-44630555)
chr2 (347-391)||(17974411-17974457)
chr2 (352-403)||(20101699-20101752)
chr2 (352-403)||(25477338-25477391)
chr2 (5-46)||(25496785-25496826)
chr2 (367-403)||(32080388-32080424)
[»] chr5 (42 HSPs)
chr5 (7-204)||(9726041-9726255)
chr5 (3-147)||(35679250-35679394)
chr5 (3-146)||(4872491-4872633)
chr5 (3-86)||(20180578-20180661)
chr5 (134-206)||(35679171-35679242)
chr5 (3-86)||(37248225-37248306)
chr5 (347-403)||(6154481-6154539)
chr5 (347-403)||(7452744-7452802)
chr5 (347-403)||(26668267-26668325)
chr5 (347-403)||(26939864-26939922)
chr5 (352-403)||(36430512-36430565)
chr5 (132-196)||(4872636-4872700)
chr5 (347-403)||(37247848-37247906)
chr5 (352-403)||(10759410-10759463)
chr5 (3-92)||(40148487-40148574)
chr5 (352-400)||(6511655-6511705)
chr5 (347-403)||(29167022-29167080)
chr5 (347-391)||(35678959-35679005)
chr5 (347-403)||(36424627-36424685)
chr5 (347-403)||(37646104-37646164)
chr5 (348-403)||(4872872-4872929)
chr5 (352-403)||(12104048-12104101)
chr5 (24-86)||(39519005-39519067)
chr5 (82-176)||(17550863-17550960)
chr5 (3-74)||(12103617-12103686)
chr5 (352-393)||(40148837-40148880)
chr5 (368-403)||(23757213-23757248)
chr5 (368-403)||(23822669-23822704)
chr5 (347-403)||(37536986-37537045)
chr5 (368-403)||(39519397-39519432)
chr5 (356-403)||(17159375-17159424)
chr5 (352-403)||(17162851-17162904)
chr5 (81-147)||(25689011-25689077)
chr5 (352-393)||(15149660-15149701)
chr5 (352-397)||(15413783-15413828)
chr5 (23-84)||(16639000-16639061)
chr5 (94-147)||(16807753-16807806)
chr5 (368-401)||(23689083-23689116)
chr5 (132-176)||(25688964-25689009)
chr5 (347-403)||(9725823-9725874)
chr5 (352-389)||(20180216-20180255)
chr5 (83-147)||(23688763-23688827)
[»] chr6 (39 HSPs)
chr6 (12-204)||(19674385-19674594)
chr6 (3-86)||(4156774-4156857)
chr6 (132-206)||(12689721-12689795)
chr6 (30-125)||(12799337-12799432)
chr6 (3-87)||(25313875-25313959)
chr6 (3-87)||(26201369-26201453)
chr6 (3-86)||(16835581-16835664)
chr6 (12-86)||(11534129-11534203)
chr6 (1-86)||(20747725-20747809)
chr6 (30-147)||(22610129-22610246)
chr6 (18-86)||(14509577-14509645)
chr6 (3-70)||(11428549-11428616)
chr6 (347-403)||(16835211-16835269)
chr6 (347-403)||(17963607-17963665)
chr6 (3-74)||(33687082-33687153)
chr6 (352-403)||(2699164-2699217)
chr6 (3-84)||(6407286-6407367)
chr6 (3-86)||(2699516-2699599)
chr6 (7-74)||(12689567-12689634)
chr6 (12-86)||(11559639-11559713)
chr6 (352-403)||(19994433-19994486)
chr6 (352-403)||(20747346-20747399)
chr6 (30-86)||(17599983-17600040)
chr6 (29-84)||(12405786-12405842)
chr6 (347-403)||(6406909-6406967)
chr6 (25-86)||(19994820-19994882)
chr6 (350-391)||(12689961-12690004)
chr6 (351-400)||(19674766-19674817)
chr6 (12-86)||(11570167-11570241)
chr6 (352-403)||(11612952-11613005)
chr6 (352-403)||(25313522-25313575)
chr6 (352-403)||(26201016-26201069)
chr6 (352-394)||(5856979-5857023)
chr6 (353-403)||(11428952-11429004)
chr6 (352-394)||(11533759-11533803)
chr6 (352-394)||(11559269-11559313)
chr6 (86-147)||(12689658-12689719)
chr6 (88-121)||(17281289-17281322)
chr6 (370-403)||(17600391-17600424)
[»] scaffold0009 (2 HSPs)
scaffold0009 (25-145)||(147755-147876)
scaffold0009 (132-204)||(147679-147751)
[»] chr8 (34 HSPs)
chr8 (37-204)||(22714283-22714467)
chr8 (25-147)||(7002261-7002383)
chr8 (3-92)||(44925338-44925427)
chr8 (5-84)||(17953398-17953477)
chr8 (3-74)||(38181677-38181748)
chr8 (7-86)||(40125318-40125397)
chr8 (3-86)||(1808036-1808119)
chr8 (3-74)||(1910389-1910460)
chr8 (4-87)||(15950975-15951057)
chr8 (3-86)||(19167237-19167320)
chr8 (3-74)||(33417120-33417191)
chr8 (5-74)||(17020943-17021012)
chr8 (5-74)||(17551380-17551449)
chr8 (347-403)||(40124943-40125001)
chr8 (352-403)||(26780098-26780151)
chr8 (352-403)||(28559165-28559218)
chr8 (147-200)||(7002400-7002453)
chr8 (352-403)||(2966579-2966632)
chr8 (352-403)||(17021250-17021302)
chr8 (352-403)||(17551687-17551739)
chr8 (30-91)||(23548034-23548096)
chr8 (352-403)||(44924970-44925023)
chr8 (5-74)||(18875823-18875892)
chr8 (3-59)||(15875142-15875198)
chr8 (347-403)||(7002634-7002692)
chr8 (352-400)||(28564347-28564397)
chr8 (347-403)||(33417519-33417577)
chr8 (352-400)||(38181334-38181384)
chr8 (352-403)||(15950621-15950674)
chr8 (352-399)||(18875438-18875487)
chr8 (132-204)||(28864047-28864117)
chr8 (352-388)||(5884891-5884927)
chr8 (349-390)||(28859379-28859422)
chr8 (3-59)||(36684174-36684230)
[»] scaffold0002 (5 HSPs)
scaffold0002 (3-86)||(4653-4736)
scaffold0002 (347-403)||(5053-5111)
scaffold0002 (12-86)||(443366-443440)
scaffold0002 (132-204)||(151027-151099)
scaffold0002 (81-115)||(150959-150993)
[»] scaffold0352 (2 HSPs)
scaffold0352 (3-74)||(7696-7767)
scaffold0352 (347-403)||(8098-8156)
[»] scaffold0008 (1 HSPs)
scaffold0008 (30-74)||(256404-256448)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 3656726 - 3656534
Alignment:
Q  12 cacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttatagagag 111  Q
    ||||| || |||||||| ||||||||||||||||| ||| |||| ||||||||| |||||| || ||||||||||||||||||||||||||||||| |||    
T  3656726 cacaagtccagaaagggagaagagagaaagagtttccgataactgaatgaaactctttggtctattttttgaactaggtgagctctccttttatagggag 3656627  T
Q  112 agtttgtaactaatttgaagaaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    |||||||||||||||||  ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  3656626 agtttgtaactaatttggtgaaacttaagaattaagcaacccacagatcagctcaagtaacaaactaatcggataaattcaaaaagaaacaaa 3656534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 2207305 - 2206993
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||  |||||||||||| |||||||||||||    
T  2207305 actcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttggtgtgttttttgaactagatgagctctccttt 2207206  T
Q  103 tatagagagagtttgtaactaatttgaagaaac-----------------ttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaat 185  Q
    || || |||||||||||||| ||||||||||||                 ||||||||||||||||||| | ||||||||||||||||||||||| | ||    
T  2207205 tacagggagagtttgtaactgatttgaagaaacttaataattaagtaaacttaaaaattaagcaacccatagatcagctcaagtaacaaactaattggat 2207106  T
Q  186 aagttcaaaaagaaacaaatc---------aactaacgaaggaaagataggaaatttagttgaat--tcaatcttatcacaacattagctaaaattatgg 274  Q
    ||||||||||||||||||| |         |||||| ||||||||||||| ||||| ||||||||  |||||| ||||||||||  | ||||||||||||    
T  2207105 aagttcaaaaagaaacaaaccaatgttccaaactaatgaaggaaagatagaaaattcagttgaattctcaatcatatcacaacaaaacctaaaattatgg 2207006  T
Q  275 gaagtaatatcca 287  Q
    ||||| |||||||    
T  2207005 gaagtgatatcca 2206993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 29350830 - 29351048
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||||||| ||||| |||| |||||  ||||||||||||||||  |||||||||||||||||| ||||||||  |||||||||||||||| |||||||||    
T  29350830 actcgtcaacacaagtcaataaaggaagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaactaggtgaactctccttt 29350929  T
Q  103 tatagagagagtttgtaactaatttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaat 185  Q
    ||||| |||||||||||||||||||| ||                 ||||||||||||||||||||| ||| ||||| |||||||||||| |||||| ||    
T  29350930 tatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacctacatatcaggtcaagtaacaaattaatcggat 29351029  T
Q  186 aagttcaaaaagaaacaaa 204  Q
    |||||||||||||||||||    
T  29351030 aagttcaaaaagaaacaaa 29351048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 46964601 - 46964684
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||||| |||||||||||    
T  46964601 actcgtcaacacaaatcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgatttttgaact 46964684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 20520546 - 20520629
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||    
T  20520546 actcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgccaactcaatgaaactctttggtgtaattttggaact 20520629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 3419578 - 3419661
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||| ||||||| ||||||||  ||||||||||    
T  3419578 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcagtgaaactctttggtgtgttttttgaact 3419661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 7570722 - 7570651
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  7570722 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 7570651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 12965389 - 12965310
Alignment:
Q  7 gtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||| ||||| ||||||||||| ||||||||||||||||  |||||||||||| ||||| ||| ||||||||||||||||    
T  12965389 gtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaataaaactcttttgtgtaatttttgaact 12965310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 23660970 - 23660899
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  23660970 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 23660899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 23665629 - 23665558
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  23665629 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 23665558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 24037877 - 24037806
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  24037877 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 24037806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 27709521 - 27709592
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||    
T  27709521 actcgtcaacacaagtcaagaaaaggagaagagagaaagagtttccgacaactcaatgaaactctttggtgt 27709592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 757870 - 757790
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttga 83  Q
    |||||||| ||||| ||||||||||| ||||||||||||| ||  |||||||||||||||||| ||||||||  |||||||    
T  757870 actcgtcaacacaagtcaagaaagggagaagagagaaagaattcccgacaactcaatgaaactctttggtgtgttttttga 757790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 55432221 - 55432269
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgggacccccacact 400  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  55432221 atttaaacactactaatgtgtgttctattttgtgtgggacccccacact 55432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 18472995 - 18473053
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  18472995 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 18473053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 55326367 - 55326438
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||| | ||||||||    
T  55326367 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaaatctttggtgt 55326438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 20520955 - 20521008
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  20520955 atttaaacactactaatgtgtgtattctattttatgtgggacccccacactcta 20521008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 55326766 - 55326821
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacact 400  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  55326766 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacact 55326821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 757471 - 757413
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  757471 ccacaatttaaacactactaatgtgtgtgttctattttatgtgagacccccacactcta 757413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 3656364 - 3656306
Alignment:
Q  347 ccactatttaaacactactaatgt--gtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| ||| ||||    
T  3656364 ccactatttaaacactactaatgtccgtgttctattttatgtgggacccctacattcta 3656306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 7570322 - 7570264
Alignment:
Q  347 ccactatttaaacactactaat--gtgtgttctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  7570322 ccacaatttaaacactactaatatgtgtgttctattttatgcgggacccccacactcta 7570264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 27709920 - 27709975
Alignment:
Q  347 ccactatttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  27709920 ccacaatttaaacactactaacgtatgttctattttatgtggga-ccccacactcta 27709975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 14437797 - 14437739
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  ||||||||||||| |||| ||||||||||    
T  14437797 ccacaatttaaacactactaatgtgtgtgttctattttatgtgagacctccacactcta 14437739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 20175387 - 20175437
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  20175387 atttaaatactactaatgtgtgttctattttatgt-ggaaccccacactcta 20175437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 2206931 - 2206880
Alignment:
Q  350 ctatttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||||||||||    
T  2206931 ctatttaaacactactgatgtgt--tctattttatgtgggtcccccacactcta 2206880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 7860702 - 7860755
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||| |||||||  ||||||||||||||||||||| ||||||||||    
T  7860702 atttaaacactattaatgtgtgtgttctattttatgtgggacctccacactcta 7860755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 29351070 - 29351123
Alignment:
Q  207 aactaacgaaggaaagataggaaatttagttgaatt--caatcttatcacaaca 258  Q
    |||||| ||||||||||||||||||| |||||||||  ||||||||||||||||    
T  29351070 aactaatgaaggaaagataggaaattcagttgaattttcaatcttatcacaaca 29351123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 3426068 - 3426120
Alignment:
Q  353 tttaaacactactaatgtgtg--ttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||| ||||    
T  3426068 tttaaacactactaatgtgtgagttctattttatgtggtacccccacattcta 3426120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 35456446 - 35456397
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||| |||||||||||||||| ||||||||||||| ||||| ||||||||    
T  35456446 agggagaagagagaaagagttatcgacaactcaataaaactatttggtgt 35456397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 12566042 - 12565970
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    ||||||||||||||| |||| |||| |||||| |||| | ||||| ||||  |||||||||||| ||||||||    
T  12566042 aaacttaaaaattaaacaactcacagatcagcgcaagcaccaaacgaatcagataagttcaaaatgaaacaaa 12565970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 13155961 - 13155889
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    ||||||||||||||| |||| || | |||||| |||||| ||||| ||||  |||||||||||| ||||||||    
T  13155961 aaacttaaaaattaaacaactcagagatcagcgcaagtaccaaacgaatcagataagttcaaaatgaaacaaa 13155889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 13260445 - 13260373
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    ||||||||||||||| |||| |||| |||||| |||| | ||||| ||||  |||||||||||| ||||||||    
T  13260445 aaacttaaaaattaaacaactcacagatcagcgcaagcaccaaacgaatcagataagttcaaaatgaaacaaa 13260373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 12970910 - 12970860
Alignment:
Q  352 atttaaacactactaa--tgtgtgttctattttatgtgggacccccacact 400  Q
    ||||||||||||||||  ||||||||||||||||||||||| | |||||||    
T  12970910 atttaaacactactaaagtgtgtgttctattttatgtgggatcaccacact 12970860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 23660596 - 23660538
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  | |||||||||||||| | ||||||||||    
T  23660596 ccacaatttaaacactactaatgtgtgtgttttattttatgtgggagctccacactcta 23660538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 23665228 - 23665170
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||| ||||| | ||||||||||    
T  23665228 ccacaatttaaacactactaatgtgtgtgttctattttatatgggagctccacactcta 23665170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 13156029 - 13155995
Alignment:
Q  81 tgaactaggtgagctctccttttatagagagagtt 115  Q
    ||||||||||||||||||||||||||| |||||||    
T  13156029 tgaactaggtgagctctccttttatagggagagtt 13155995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 29351216 - 29351268
Alignment:
Q  347 ccactatttaaacactactaa--tgtgtgttctattttatgtgggacccccac 397  Q
    ||||||||||||||||| |||  |||||||| |||||||||||||||| ||||    
T  29351216 ccactatttaaacactaataatgtgtgtgttttattttatgtgggacctccac 29351268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 39774932 - 39774876
Alignment:
Q  347 ccactatttaaacactactaat--gtgtgttctattttatgtgggacccccacactc 401  Q
    |||| |||||||||||||||||  |||||||||||||||||||  | ||||||||||    
T  39774932 ccacaatttaaacactactaatatgtgtgttctattttatgtgaaatccccacactc 39774876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 12964985 - 12964933
Alignment:
Q  352 atttaaacactactaatgtgtgt-tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||| || ||| | |||||||||||||||| ||||||||||    
T  12964985 atttaaacactactaaagtttgtgtttattttatgtgggaccaccacactcta 12964933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 12971281 - 12971225
Alignment:
Q  30 gaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||||| ||||||  ||||||||||||||| | ||| | ||||||||||||||    
T  12971281 gaagagagaacgagtttcggacaactcaatgaaattcttttgcgtaatttttgaact 12971225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 23192329 - 23192112
Alignment:
Q  6 cgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttat 105  Q
    ||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  23192329 cgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtaatttttgaattaggtgagctctccttttat 23192230  T
Q  106 agagagagtttgtaactaatttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataag 188  Q
    || |||||||||||||||||||| ||                 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  23192229 agggagagtttgtaactaatttggagaaactaaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaacaaactaatcggataag 23192130  T
Q  189 ttcaaaaagaaacaaatc 206  Q
    ||||||||||||||||||    
T  23192129 ttcaaaaagaaacaaatc 23192112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 16036230 - 16036427
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaacta 123  Q
    |||| |||||||||||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  16036230 agggagaagagagaaagagttctcgacaacttaatagaaactctttggtgtaatttttgaactaggtgagctctgcttttatagggagagtttgtaacta 16036329  T
Q  124 atttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    ||||| ||                 ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  16036330 atttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagaaacaaactaatcggataagttcaaaaagaaacaaa 16036427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 40166553 - 40166773
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||||||| ||| | |||||||| || ||||||||||||||||  |||||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  40166553 actcgtcaacacgagtcaagaaaaggagaagagagaaagagttcccgacaactcaatgaaactcttaggtgtaatttttgaactaggtgaactctccttt 40166652  T
Q  103 tatagagagagtttgtaactaatttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaat 185  Q
    | ||| || | ||| ||||||||||| ||                 ||||||||||||||||||||||||| |||||||||||||||||| |||||| ||    
T  40166653 tttagggataatttataactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaacaaattaatcggat 40166752  T
Q  186 aagttcaaaaagaaacaaatc 206  Q
     ||||||||||||||||||||    
T  40166753 cagttcaaaaagaaacaaatc 40166773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 39587864 - 39587641
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||||||| ||||| | ||| || || ||||||||||| ||||   ||||||||||||||||| ||| ||||  ||||||||||||||||||||||||||    
T  39587864 actcgtcaacacaagttaaggaatggagaagagagaaatagttcctgacaactcaatgaaactatttagtgtgttttttgaactaggtgagctctccttt 39587765  T
Q  103 tatagagagagtttgtaactaatttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaat 185  Q
    || || |||||||||||||||||||| ||                 |||||||||||||||||||||| || ||||||||||||||||||||||||| ||    
T  39587764 tacagggagagtttgtaactaatttggagaaacataagaattaagtaaacttaaaaattaagcaacccgcatatcagctcaagtaacaaactaatcggat 39587665  T
Q  186 aagttcaaaaagaaacaaatcaac 209  Q
    || |||||||||||||||||||||    
T  39587664 aaattcaaaaagaaacaaatcaac 39587641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 7882575 - 7882700
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaactaggtgagctctcctt 101  Q
    |||||||| ||||| | ||||||||| |||||||||||||||| ||||||||||||| |||||| |||| ||| || |||||||||||||||||||||||    
T  7882575 actcgtcaacacaagttaagaaagggagaagagagaaagagttctcgacaactcaatagaaactctttgatgtgatctttgaactaggtgagctctcctt 7882674  T
Q  102 ttatagagagagtttgtaactaatttg 128  Q
    ||  || ||||||||||||||||||||    
T  7882675 ttgcag-gagagtttgtaactaatttg 7882700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 12260601 - 12260797
Alignment:
Q  24 aagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaacta 123  Q
    ||||| |||||||||||||||| || ||||||||||  || | ||||||||  || |||||||||||||||||||||||||||| |||||||||||||||    
T  12260601 aagggagaagagagaaagagttctcaacaactcaatagaattctttggtgtgtttcttgaactaggtgagctctccttttatag-gagagtttgtaacta 12260699  T
Q  124 atttgaagaaactta-----------------aaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    ||||| | |||||||                 ||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||||||||||||||    
T  12260700 atttggaaaaacttaagaattaagtcaacttcaaaattaagcaactcacatatcagctcaagtaacaaattaatcggataaattcaaaaagaaacaaa 12260797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 38621295 - 38621380
Alignment:
Q  1 aaactcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  38621295 aaactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaact 38621380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 19798506 - 19798423
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| |||||||| || ||||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||    
T  19798506 actcgtcaacacaagtcaagaaaaggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtattttttgaact 19798423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 16834064 - 16834148
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaacta 87  Q
    |||| ||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||| | |||||||||    
T  16834064 actcatcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtattgtttgaacta 16834148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 25844344 - 25844415
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  25844344 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 25844415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 10136314 - 10136372
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  10136314 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 10136372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 16036595 - 16036653
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  16036595 ccactatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactcta 16036653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 16649140 - 16649058
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||| ||| ||||||||||| ||||  |||||||||||||||||||||||||||  ||||||||||    
T  16649140 actcgtcaacacaagtcaagaa-gggagaagagagaaaaagttcccgacaactcaatgaaactttttggtgtgttttttgaact 16649058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 33300745 - 33300666
Alignment:
Q  7 gtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||| ||||| ||||||||||| ||||||||||||||||  |||||| ||||||||||| ||||||||  ||||||||||    
T  33300745 gtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaattcaatgaaactctttggtgtgttttttgaact 33300666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 39200267 - 39200196
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| |||||||||||| |||  |||||||||||||||||| ||||||||    
T  39200267 actcgtcaacacaagtcaagaaagggagaagagagaaagggttcccgacaactcaatgaaactctttggtgt 39200196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 12260965 - 12261022
Alignment:
Q  347 ccactatttaaacactactaatg--tgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  12260965 ccactatttaaacactactaatgagtgtgttctattttatgtggga-ccccacactcta 12261022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 25844745 - 25844803
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  25844745 ccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactcta 25844803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 46697073 - 46697143
Alignment:
Q  133 aacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    |||||| |||||||||||| |||| |||| |||||| ||||||||||||| ||||||||||||| |||||||    
T  46697073 aacttagaaattaagcaacacacagatcaactcaag-aacaaactaatcggataagttcaaaaataaacaaa 46697143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 47450730 - 47450663
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttg 70  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  ||| |||||||||||||| ||||    
T  47450730 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgataactcaatgaaactctttg 47450663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 16648732 - 16648678
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggaccccc-acactcta 403  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  16648732 atttaaacactactaatgtgtgtgttctattttatgtgggaccccctacactcta 16648678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 39586184 - 39586130
Alignment:
Q  348 cactatttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||    
T  39586184 cactatttaaaca-tattaatgtttgttctattttatgtgggacctccacactcta 39586130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 20107961 - 20108023
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaact 86  Q
    |||| |||||||||||||||| ||||||||||||| ||| || |||||||||||||| |||||    
T  20107961 agggagaagagagaaagagttctcgacaactcaatagaatctctttggtgtaattttagaact 20108023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 46697011 - 46697070
Alignment:
Q  86 taggtgagctctccttttatagagagagtttgtaactaatttgaagaaacttaaaaattaag 147  Q
    ||||| ||||||| ||||||||||||  ||| |||||||||||||||||||||| |||||||    
T  46697011 taggttagctctctttttatagagag--tttttaactaatttgaagaaacttaagaattaag 46697070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 38622184 - 38622236
Alignment:
Q  353 tttaaacactactaatgtgtg--ttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||| ||||  |||||||||||||||||| |||||||||||    
T  38622184 tttaaacactactaatatgtgagttctattttatgtgggactcccacactcta 38622236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 23191944 - 23191888
Alignment:
Q  347 ccactatttaaacactactaatgt--gtgttctattttatgtgggacccccacactcta 403  Q
    |||||| |||||||||||||||||  ||||||||||||||||  |||||||||||||||    
T  23191944 ccactacttaaacactactaatgtgtgtgttctattttatgt--gacccccacactcta 23191888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 8138472 - 8138511
Alignment:
Q  212 acgaaggaaagataggaaatttagttgaattcaatcttat 251  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  8138472 acgaaggaaagataggaaattcagttgaattcattcttat 8138511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 403
Target Start/End: Complemental strand, 39199851 - 39199816
Alignment:
Q  368 tgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||||| ||||||||||    
T  39199851 tgtgtgttctattttatgtgggacctccacactcta 39199816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 51040623 - 51040573
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacact 400  Q
    |||||||||||||||||||||||  ||||||| ||||||||| ||||||||    
T  51040623 atttaaacactactaatgtgtgtgttctatttcatgtgggactcccacact 51040573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 10999372 - 10999315
Alignment:
Q  30 gaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaacta 87  Q
    ||||||| ||| |||| ||||||||||||| ||| | |||||||| ||||||||||||    
T  10999372 gaagagataaaaagttctcgacaactcaataaaattatttggtgtgatttttgaacta 10999315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 19107200 - 19107418
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||||||| ||||| ||||||||| | ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  19107200 actcgtcaacacaagtcaagaaagagagaagagagaaagagtttccgacaactcaatgaaactctttggtgtgatttttgaactaggtgagctctccttt 19107299  T
Q  103 tatagagagagtttgtaactaatttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaat 185  Q
    ||||| |||| ||||||||||||||| ||                 ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  19107300 tatagggagaatttgtaactaatttggagaaatttaagaattaagtaaacttaaaaattaagcaacccacatatcagctcaagtaacaaactaatcggat 19107399  T
Q  186 aagttcaaaaagaaacaaa 204  Q
    |||||||||||||||||||    
T  19107400 aagttcaaaaagaaacaaa 19107418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 19102570 - 19102787
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||||||| ||||| ||||||||||| ||||||||||| ||||  |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  19102570 actcgtcaacacaagtcaagaaagggagaagagagaaaaagttcccgacaactcaatgaaactctttggtttgatttttgaactaggtgagctctccttt 19102669  T
Q  103 tatagagagagtttgtaactaatttgaag----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaata 186  Q
    ||||| |||||||||||||||||||| ||                ||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||    
T  19102670 tatagggagagtttgtaactaatttggagaaacttaagaattagtaaacttaaaaattaagcaacccacatatcagctcaagtaacaaacgaataggata 19102769  T
Q  187 agttcaaaaagaaacaaa 204  Q
    ||||||||||||||||||    
T  19102770 agttcaaaaagaaacaaa 19102787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 8029845 - 8029630
Alignment:
Q  6 cgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttat 105  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||||||||| |||||| || |||||||||||||||||||||||||||||    
T  8029845 cgtcaacacaaatcaaggaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtatattttttgaactaggtgagctctccttttat 8029746  T
Q  106 agagagagtttgtaactaatttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataag 188  Q
    || |||||||||||||||||||| ||                 ||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||    
T  8029745 agggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaacacactaatcagataag 8029646  T
Q  189 ttcaaaaagaaacaaa 204  Q
    ||||||||||||||||    
T  8029645 ttcaaaaagaaacaaa 8029630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 47244732 - 47244953
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttg-aactaggtgagctctcctt 101  Q
    |||||||| ||||| |||| |||||| ||||||||||||||||  |||||||| ||||||||| |||| |||| |||||  |||||| ||||||||||||    
T  47244732 actcgtcaacacaagtcaataaagggagaagagagaaagagttcccgacaactaaatgaaactctttgatgtattttttttaactagatgagctctcctt 47244831  T
Q  102 ttatagagagagtttgtaactaatttgaagaaactta-----------------aaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaa 184  Q
    |||||| |||| ||||||||| ||||| |||||||||                 |||||||||||||||||| || |||||||||||||||||||||| |    
T  47244832 ttatagggagaatttgtaactgatttggagaaacttaagaattaagtaaactttaaaattaagcaacccacagataagctcaagtaacaaactaatcgga 47244931  T
Q  185 taagttcaaaaagaaacaaatc 206  Q
    ||||||||||||||||||||||    
T  47244932 taagttcaaaaagaaacaaatc 47244953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 32221073 - 32220990
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  32221073 actcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactttttggtgtattttttgaact 32220990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 16421631 - 16421714
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||  ||||||||||    
T  16421631 actcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttggtgtgttttttgaact 16421714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 31274103 - 31274186
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||  ||||||||||    
T  31274103 actcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttggtgtgttttttgaact 31274186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 19540685 - 19540602
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||||| ||| || || ||||||||||    
T  19540685 actcgtcaacacaaatcaagaaagggagaagagagaaagagttgccgacaactcaatgaaactctttagtttattttttgaact 19540602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 31269614 - 31269697
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  31269614 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaact 31269697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 33462870 - 33462799
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  33462870 actcgtcaacacaagtcaagaaagggagaagagagaaagagttctcgacaactcaatgaaactctttggtgt 33462799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 37259370 - 37259287
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  37259370 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaact 37259287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 12875161 - 12875225
Alignment:
Q  140 aaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    |||||||||||| |||| |||| |||||||||||||||||||| |||||||||||||||||||||    
T  12875161 aaattaagcaactcacatatcaactcaagtaacaaactaatcggataagttcaaaaagaaacaaa 12875225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 37264070 - 37263987
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||| ||||||||||| ||||||||  ||||||||||    
T  37264070 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaattcaatgaaactctttggtgtgttttttgaact 37263987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 33468509 - 33468439
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtg 73  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| |||||||    
T  33468509 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtg 33468439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 48276163 - 48276078
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactagg 89  Q
    |||||||| ||||| ||||||||||| ||||||||||||| ||  |||||||||||||||||| ||| ||||||||| |||||||||    
T  48276163 actcgtcaacacaagtcaagaaagggagaagagagaaaga-ttcccgacaactcaatgaaactctttagtgtaatttctgaactagg 48276078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 5925897 - 5925853
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgggaccccca 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5925897 atttaaacactactaatgtgtgttctattttatgtgggaccccca 5925853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 27183229 - 27183273
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgggaccccca 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27183229 atttaaacactactaatgtgtgttctattttatgtgggaccccca 27183273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 8694702 - 8694760
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  8694702 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 8694760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 12823394 - 12823311
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||  ||||||||||||||||  |||||||||||||||| | ||||||||  ||||||||||    
T  12823394 actcgtcaacacaagtcaagaaaggaagaagagagaaagagttaccgacaactcaatgaaattctttggtgtgttttttgaact 12823311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 19107567 - 19107625
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  19107567 ccactatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactcta 19107625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 2820786 - 2820839
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  2820786 atttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 2820839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 16422040 - 16422093
Alignment:
Q  352 atttaaacactactaatg--tgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  16422040 atttaaacactactaatgcgtgtgttctattttatgtgggacccccacactcta 16422093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 51698923 - 51698976
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  51698923 atttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 51698976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 12823011 - 12822959
Alignment:
Q  353 tttaaacactactaatgtgtg--ttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  12823011 tttaaacactactaatgtgtgagttctattttatgtgggacccccacactcta 12822959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42758364 - 42758300
Alignment:
Q  1 aaactcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaact 65  Q
    |||||||||| ||||| ||||||||||| | |||||||||||||| ||||||||||||| |||||    
T  42758364 aaactcgtcaacacaagtcaagaaagggagcagagagaaagagttctcgacaactcaataaaact 42758300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 31274503 - 31274561
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  31274503 ccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactcta 31274561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 37258970 - 37258912
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  37258970 ccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactcta 37258912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 37263670 - 37263612
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  37263670 ccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactcta 37263612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 51698511 - 51698582
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||| ||||||||||   ||||||||||||||||| ||||||||    
T  51698511 actcgtcaacacaagtcaagaaagggagaagatagaaagagttcctgacaactcaatgaaactctttggtgt 51698582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 55252255 - 55252338
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| |||||||||||  ||||||||||||| |  |||||||||||||||| | ||||||||  ||||||||||    
T  55252255 actcgtcaacacaagtcaagaaagggataagagagaaagagctcccgacaactcaatgaaattctttggtgtgttttttgaact 55252338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 12875033 - 12875143
Alignment:
Q  30 gaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttg-aactaggtgagctctccttttatagagagagtttgtaactaatttg 128  Q
    |||||||||||| ||| |||||||||||||  |||| || |||||  |||||  ||| ||||||| |||||||||  || ||||||||||||||||| |     
T  12875033 gaagagagaaagggttctcgacaactcaatagaactcttcggtgtgttttttttaacaaggtgagatctccttttccagggagagtttgtaactaatata 12875132  T
Q  129 aagaaacttaa 139  Q
    |||||||||||    
T  12875133 aagaaacttaa 12875143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 19102956 - 19103013
Alignment:
Q  348 cactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||    
T  19102956 cactatttaaacactattaatgtgtgtgttctattttatgtgggacctccacactcta 19103013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 32220666 - 32220613
Alignment:
Q  352 atttaaacactactaatgtgt--gttctattttatgtgggacccccacactcta 403  Q
    |||||||||||| ||||||||  |||||||||||||||||||||||||||||||    
T  32220666 atttaaacactaataatgtgtatgttctattttatgtgggacccccacactcta 32220613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 55252638 - 55252691
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  55252638 atttaaacactactaatgtgtgtgttctattttatgtgggaccaccacactcta 55252691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 403
Target Start/End: Complemental strand, 8029419 - 8029384
Alignment:
Q  368 tgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||||||||||||||||    
T  8029419 tgtgtgttctattttatgtgggacccccacactcta 8029384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 403
Target Start/End: Complemental strand, 13064894 - 13064859
Alignment:
Q  368 tgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||||||||||||||||    
T  13064894 tgtgtgttctattttatgtgggacccccacactcta 13064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 31728472 - 31728415
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  31728472 ccacaatttaaacactactaatgtgtgtgttctattttatgtggga-ccccacactcta 31728415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 32081267 - 32081214
Alignment:
Q  352 atttaaacactactaatgtgtg--ttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||  |||||||||| |||||||| ||||||||||    
T  32081267 atttaaacactactaatgtgtgagttctattttacgtgggacctccacactcta 32081214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 28601624 - 28601665
Alignment:
Q  362 tactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  28601624 tactattgtgtgttctattttatgtgggacccccacattcta 28601665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 6137977 - 6138033
Alignment:
Q  23 aaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaattt 79  Q
    |||||| ||| |||||||||||| ||||||||| ||| |||||||||||||| ||||    
T  6137977 aaagggagaaaagagaaagagttatcgacaacttaataaaactttttggtgtgattt 6138033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 13060052 - 13060112
Alignment:
Q  5 tcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaact 65  Q
    |||||| ||||| ||||||||||| ||||||||||||||||  |||||| | |||||||||    
T  13060052 tcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaattaaatgaaact 13060112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 48275943 - 48275888
Alignment:
Q  347 ccactatttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||| ||| |||||||| |||||||| | ||||||||||||||||    
T  48275943 ccactatttaaacactgctagtgtgtgttatattttatat-ggacccccacactcta 48275888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 12875393 - 12875451
Alignment:
Q  347 ccactatttaaacactactaatgtgtg--ttctattttatgtgggacccccacactcta 403  Q
    |||||||||||| | ||||||||||||  ||||||||||||  ||||||||||||||||    
T  12875393 ccactatttaaatattactaatgtgtgggttctattttatgcaggacccccacactcta 12875451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 13065289 - 13065226
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaacta 87  Q
    |||| ||||||| ||||| |||||||||||||||| |||||| ||||||||  |||||||||||    
T  13065289 agggagaagagataaagatttttcgacaactcaatagaaactctttggtgtgttttttgaacta 13065226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 19906829 - 19906896
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttg 70  Q
    |||||||| ||||| ||||||||||  ||||||||||||||||  | |||||||||| ||||| ||||    
T  19906829 actcgtcaacacaagtcaagaaaggaagaagagagaaagagttcccaacaactcaattaaactctttg 19906896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 403
Target Start/End: Original strand, 31766884 - 31766919
Alignment:
Q  368 tgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||||||||||| ||||    
T  31766884 tgtgtgttctattttatgtgggacccccacaatcta 31766919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 33462456 - 33462406
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  |||||||| ||||||| ||||||||||    
T  33462456 atttaaacactactaatgtgtgtcttattttat-tgggacctccacactcta 33462406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 5270529 - 5270480
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccc 394  Q
    |||| ||||||| |||||||||||||||  ||||||||||||||||||||    
T  5270529 ccacaatttaaatactactaatgtgtgtgttctattttatgtgggacccc 5270480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 6943390 - 6943452
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaact 86  Q
    |||| |||||| ||||||||| ||||||||||||| |||||| |||| ||| |||||||||||    
T  6943390 agggagaagagcgaaagagttctcgacaactcaatagaaactctttgatgtgatttttgaact 6943452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 33468104 - 33468064
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtggga 390  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  33468104 atttaaacactactaatgtgtgtgttctattttatgtggga 33468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 145928 - 145785
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||  |||| |||||||| |||||||||||||||||||||||||||    
T  145928 actcgtcagcacaagtcaagaaagggagaagagagaaagagttatcgacaactcaatagaactctttggtgtgatttttgaactaggtgagctctccttt 145829  T
Q  103 tatagagagagtttgtaactaatttgaagaaacttaaaaattaa 146  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  145828 tatagagagagattgtaactaatttggagaaacttaaaaattaa 145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 65001 - 64943
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||||    
T  65001 ccactatttaaagactactaatgtgtgtgttctattttatgtgggacccctacactcta 64943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 145770 - 145711
Alignment:
Q  144 taagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    ||||||||||||| |||||||||||| ||| |||||| |||||||||| ||||||||||||    
T  145770 taagcaacccacatatcagctcaagttacacactaattgaataagttc-aaaagaaacaaa 145711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 26045 - 26262
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||| ||| ||||| ||||||||||| ||||||||||||||||  || ||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  26045 actcatcaacacaagtcaagaaagggagaagagagaaagagttcccggcaactcaatgaaactctttggtgtgatttttgaactaggtgagctctccttt 26144  T
Q  103 tatagagagagtttgtaactaatttgaaga-----------------aacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaat 185  Q
    ||||| |||||||||||||||||||| |||                 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  26145 tatagggagagtttgtaactaatttggagaaacttaagaattaagttaacttaaaaattaagcaacccacaaatcagct-aagtaacaaactaatcggat 26243  T
Q  186 aagttcaaaaagaaacaaa 204  Q
    |||||||||||||||||||    
T  26244 aagttcaaaaagaaacaaa 26262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 29765 - 29836
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||    
T  29765 actcgtcaacacaagtcaagaaagggagaagagagaaaaagtttccgacaactcaatgaaactctttggtgt 29836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 26433 - 26488
Alignment:
Q  350 ctatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| || |||||||    
T  26433 ctatttaaacactactaatgtgtgtgttctattttatgtgggacctccgcactcta 26488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 30171 - 30224
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||    
T  30171 atttaaacactactaatgtgtgtgttctattttatgtgggatccctacactcta 30224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 5 - 285
Target Start/End: Original strand, 4580093 - 4580386
Alignment:
Q  5 tcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaa-tttttgaactaggtgagctctcctttt 103  Q
    |||||| ||||| ||||||||||| |||||||||||||||| | ||||||||| |  |||| |||| ||||| ||||||||||||||||||||| |||||    
T  4580093 tcgtcaacacaagtcaagaaagggagaagagagaaagagttcttgacaactcactagaactctttgctgtaattttttgaactaggtgagctct-ctttt 4580191  T
Q  104 atagagagagtttgtaactaatttgaagaaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaa 203  Q
    |||| |||||||||||||||| |     |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  4580192 atagtgagagtttgtaactaagt-----aaacttaaaaattaagcaactcacatatcagctcaagtaacaaactaatcggataagttcaaaaagaaacaa 4580286  T
Q  204 atc------------aactaacgaaggaaagataggaaatttagttgaat--tcaatcttatcacaac----attagctaaaattatgggaagtaatatc 285  Q
    | |            |||||| ||||||||||||||||||| ||||| ||  ||||||||||||||||    || ||||| ||||||||||||| |||||    
T  4580287 acccgcaatgaaacaaactaatgaaggaaagataggaaattcagttggattctcaatcttatcacaacaagtataagctacaattatgggaagtgatatc 4580386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 30258692 - 30258902
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||||||| ||||| ||||||||||| ||||||| |||||||    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||     
T  30258692 actcgtcaacacaagtcaagaaagggagaagagaaaaagagtgcctgacaactcaatgaaactctttggtgtgatttttgaactaggtgagctctcctta 30258791  T
Q  103 tatagagagagtttgtaactaatttgaagaaacttaaaaattaag---------caacccacaaatcagctcaagtaacaaactaatcgaataagttcaa 193  Q
    ||||| |||| ||||||||||||| |||||||||||| |||||||          || ||||||||||||| ||||||||||||||||  ||||| ||||    
T  30258792 tatagggagaatttgtaactaattcgaagaaacttaagaattaagtaaacttaaaaatccacaaatcagctaaagtaacaaactaatcagataagctcaa 30258891  T
Q  194 aaagaaacaaa 204  Q
    |||||||||||    
T  30258892 aaagaaacaaa 30258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 26286629 - 26286430
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaacta 123  Q
    |||| |||||||||||||||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |  |||||||||||||||    
T  26286629 agggagaagagagaaagagttctcgacaactcaatagaaactctttggtgtgatttttgaactaggtgagctctccttttacaaggagagtttgtaacta 26286530  T
Q  124 atttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaatc 206  Q
    ||||| ||                 |||||||||||||| |||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  26286529 atttggagaaacttaagaattaagtaaacttaaaaattatgcaacccacatatcagctcaagtaagaaactaatcggataagttcaaaaagaaacaaatc 26286430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 13313772 - 13313482
Alignment:
Q  24 aagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaacta 123  Q
    ||||| ||||||||||||||||  | |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  13313772 aagggagaagagagaaagagttccctacaactcaataaaactctttggtgtaatttttgaactaggtgaactctcattttataggaagagtttgtaacta 13313673  T
Q  124 atttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaac----taatcgaataagttcaaaaagaaaca 202  Q
    ||||| ||                 ||||||||||||||||||||||||  |||| ||||| ||||||||    |||||| |||||||||||||||||||    
T  13313672 atttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacgtatcaactcaattaacaaactaattaatcggataagttcaaaaagaaaca 13313573  T
Q  203 aatcaactaacgaaggaaagataggaaatttagttgaat--tcaatcttatca----caacattagctaaaattatgggaagtaatatcca 287  Q
    |||  ||||| |||||||||||| ||||||  |||| ||  || |||||||||    |||||| | ||||||||||| ||||| |||||||    
T  13313572 aattcactaatgaaggaaagatatgaaattctgttggattctcgatcttatcacaaccaacataaactaaaattatgtgaagtgatatcca 13313482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 8268885 - 8268967
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaac 85  Q
    |||||||| ||||| |||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  8268885 actcgtcaacacaagtcaacaaagggagaagagagaaagagttctcgacaactcaatgaaactctttggtgtaatttttgaac 8268967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 12799976 - 12800065
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtga 92  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||  ||||||||||| ||||    
T  12799976 actcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttggtgtgttttttgaactaagtga 12800065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 42626094 - 42626011
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  ||||||||||||||||||  |||||||||||||||||||    
T  42626094 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactcattggtgtaatttttgaact 42626011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 4930813 - 4930894
Alignment:
Q  5 tcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  4930813 tcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaact 4930894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 27238740 - 27238811
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  27238740 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 27238811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 26286265 - 26286210
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacact 400  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  26286265 ccactatttaaacactactaatgtgtgtgttctattttatgtgggacccccacact 26286210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 3046179 - 3046242
Alignment:
Q  24 aagggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaact 86  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  3046179 aagggagaagagagaaagagttatcgccaactcaatagaaactttttggtgtaatttttgaact 3046242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 12181854 - 12181801
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12181854 atttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 12181801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 42625680 - 42625627
Alignment:
Q  352 atttaaacactactaatgtgtg--ttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  42625680 atttaaacactactaatgtgtgagttctattttatgtgggacccccacactcta 42625627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 2595414 - 2595497
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| |||| |||||| |||||||||||| |||  |||||||||||||||||| ||| ||||  ||||||||||    
T  2595414 actcgtcaacacaagtcaataaagggagaagagagaaagggttcccgacaactcaatgaaactctttcgtgtgttttttgaact 2595497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 4931212 - 4931270
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  4931212 ccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactcta 4931270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 13313421 - 13313363
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||  ||||||||||    
T  13313421 ccactatttaaacactactaatgtgtgtgttctattttatgtgggacatccacactcta 13313363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 26342201 - 26342251
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacact 400  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  26342201 atttaaacactactaatgtgtgtgttctattttatgtgggacccccacact 26342251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 10387842 - 10387742
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaactaggt-gagctctccttttatagagagagtttgtaact 122  Q
    |||| |||||||||||||||| ||||||||||||| |||||| |||| ||| |||||||||||| || |||  |||  |||||| ||||| |||||||||    
T  10387842 agggagaagagagaaagagttatcgacaactcaatagaaactctttgatgtgatttttgaactaagtggagtcctctatttatatagagattttgtaact 10387743  T
Q  123 a 123  Q
    |    
T  10387742 a 10387742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 4580454 - 4580512
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||||||| ||||||||    
T  4580454 ccactatataaacactactaatgtgtgtgttctattttatatgggacccctacactcta 4580512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 12257011 - 12257068
Alignment:
Q  347 ccactatttaaacactactaatg--tgtgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  12257011 ccacaatttaaacactactaatgcgtgtgttctattttatgtggga-ccccacactcta 12257068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 30258924 - 30259010
Alignment:
Q  207 aactaacgaaggaaagataggaaatttagttgaattc--aatcttatcacaaca----ttagctaaaattatgggaagtaatatcca 287  Q
    |||||||||||||||||||| ||||| |||| |||||  |||||||||||||||    | | ||||||||||||||||| |||||||    
T  30258924 aactaacgaaggaaagatagaaaattcagttcaattctcaatcttatcacaacaaacataatctaaaattatgggaagtgatatcca 30259010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 3046568 - 3046612
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccc 394  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  3046568 atttaaacactactaatgtgtgtgttctattttatgtgggacccc 3046612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 15233173 - 15233269
Alignment:
Q  82 gaactaggtgagctctccttttatagagagagtttgtaactaatttgaag----aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaa 175  Q
    |||||||| ||||||||||||||||| |||||||  ||| |||| || ||    |||||||||||||||||||||| || || || ||||||||||||    
T  15233173 gaactaggagagctctccttttatag-gagagttcctaattaatctggagaagtaaacttaaaaattaagcaacccgcagattagttcaagtaacaaa 15233269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 392
Target Start/End: Complemental strand, 27246648 - 27246608
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgggacc 392  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  27246648 atttaaacactattaatgtgtgttctattttatgtgagacc 27246608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 403
Target Start/End: Original strand, 3880983 - 3881018
Alignment:
Q  368 tgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||| |||||||||||||||    
T  3880983 tgtgtgttctattttatgtgagacccccacactcta 3881018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 10392580 - 10392518
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaact 86  Q
    |||| |||||||||||||||| | ||||||||||| |||||| |||| ||| |||||||||||    
T  10392580 agggagaagagagaaagagttctagacaactcaatagaaactctttgatgtgatttttgaact 10392518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 30259252 - 30259309
Alignment:
Q  348 cactatttaaacactactaatg--tgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||  |||| ||||||||||||||  | |||||||||||    
T  30259252 cactatttaaacactactaatgtatgtgatctattttatgtggatctcccacactcta 30259309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 44508398 - 44508345
Alignment:
Q  352 atttaaacactactaat--gtgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||  |||||||||||||||| |||||  |||||||||||    
T  44508398 atttaaacactactaatatgtgtgttctattttatatgggattcccacactcta 44508345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 10392174 - 10392138
Alignment:
Q  367 atgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  10392174 atgtgtgttctattttatgtggggccctcacactcta 10392138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 14783144 - 14783241
Alignment:
Q  82 gaactaggtgagctctccttttatagagagagtttgtaactaatttgaag----aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaa 175  Q
    |||||||| |||||||||||||| || |||||||  ||| |||| || ||    ||||||||||||||||||||||  | || || ||||||||||||    
T  14783144 gaactaggagagctctccttttacagggagagttcctaattaatctggagaagtaaacttaaaaattaagcaacccgtagattagttcaagtaacaaa 14783241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 16373010 - 16373062
Alignment:
Q  32 agagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaa 84  Q
    |||||||||||||||| || ||||||||  |||| |||||||| |||||||||    
T  16373010 agagagaaagagtttttgataactcaatagaactctttggtgtgatttttgaa 16373062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 23319533 - 23319588
Alignment:
Q  31 aagagagaaagagttttcgacaactcaatgaaactttttggtgt--aatttttgaa 84  Q
    |||||||||| | || ||||||||||||||||||| ||||||||  ||||||||||    
T  23319533 aagagagaaataattatcgacaactcaatgaaactctttggtgtgaaatttttgaa 23319588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 7737369 - 7737243
Alignment:
Q  1 aaactcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctcct 100  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  7737369 aaactcgtcaacacaaatcaagaaagggagaagagagaaagagtttccgacaactcaatgaaattttttgatgtaatttttgaactaggtgagctctcct 7737270  T
Q  101 tttatagagagagtttgtaactaattt 127  Q
    |||||||||||||||||||||||||||    
T  7737269 tttatagagagagtttgtaactaattt 7737243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 31327346 - 31327559
Alignment:
Q  7 gtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttata 106  Q
    |||| ||||| |||| |||||| ||||||||||||||||  |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  31327346 gtcaacacaagtcaaaaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgatttttgaactaggtgagctctccttttata 31327445  T
Q  107 gagagagtttgtaactaatttgaagaaacttaa-----------------aaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagt 189  Q
    | |||||||||||||||||||| ||||||||||                 ||||||||||||||| |  | |||||||||||||||||||||| ||||||    
T  31327446 gggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccata--ttagctcaagtaacaaactaatcggataagt 31327543  T
Q  190 tcaaaaagaaacaaat 205  Q
    ||||||||||||||||    
T  31327544 tcaaaaagaaacaaat 31327559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 31334114 - 31334280
Alignment:
Q  54 ctcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaactaatttgaagaaacttaa-------------- 139  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||                  
T  31334114 ctcaatgaaactctttggtgtgatttttgaactaggtgagctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaact 31334213  T
Q  140 ---aaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaat 205  Q
       ||||||||||||||| |  | |||||||||||||||||||||| ||||||||||||||||||||||    
T  31334214 taaaaattaagcaacccata--ttagctcaagtaacaaactaatcggataagttcaaaaagaaacaaat 31334280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 19578064 - 19577943
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaactaa 124  Q
    |||| |||||||||||||||||||||||||||||| ||| | ||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  19578064 agggagaagagagaaagagttttcgacaactcaataaaaatatttagtgtgatttttgaactaggtgagctctccttttatagagag-ttttgtaactaa 19577966  T
Q  125 tttgaagaaacttaaaaattaag 147  Q
    | || | |||||||| |||||||    
T  19577965 tctggataaacttaagaattaag 19577943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 42926089 - 42925945
Alignment:
Q  77 tttttgaactaggtgagctctccttttatagagagagtttgtaactaatttgaagaaa-----------------cttaaaaattaagcaacccacaaat 159  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||                 ||||||||||||||||| |||| ||    
T  42926089 tttttgaactaggtgagctctccttttatagggagagtttgtaactaatttagagaaatttaagaattaagtaaacttaaaaattaagcaactcacatat 42925990  T
Q  160 cagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  42925989 cagctcaagtaagaaactaatcgaataagttcaaaaagaaacaaa 42925945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 28603835 - 28603907
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28603835 aaacttaaaaattaagcaacctccaaatcagctcaagtaacaaactaatcggataagttcaaaaagaaacaaa 28603907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 1934499 - 1934428
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  1934499 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 1934428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 12797516 - 12797587
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||    
T  12797516 actcgtcaacacaagtcaagaaagggagaagagataaagagtttccgacaactcaatgaaactctttggtgt 12797587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 19896944 - 19896995
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19896944 atttaaacactactaatgtgtgttctattttatgtgggacccccacgctcta 19896995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 42925780 - 42925725
Alignment:
Q  348 cactatttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  42925780 cactatttaaacactactaatgtgtgttctattttacgtgggacctccacactcta 42925725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 9184922 - 9184852
Alignment:
Q  4 ctcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  9184922 ctcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 9184852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 9179835 - 9179777
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  9179835 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 9179777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 9180232 - 9180161
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  ||||| |||||||||||| ||||||||    
T  9180232 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacatctcaatgaaactctttggtgt 9180161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 9184526 - 9184468
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  9184526 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 9184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 18345405 - 18345463
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  18345405 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 18345463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 19891612 - 19891556
Alignment:
Q  347 ccactatttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  19891612 ccacaatttaaacactaataatgtgtgttctattttatgtgggactcccacattcta 19891556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 25637864 - 25637824
Alignment:
Q  353 tttaaacactactaatgtgtgttctattttatgtgggaccc 393  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25637864 tttaaacactactaatgtgtgttctattttatgtgggaccc 25637824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 30651903 - 30651961
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  30651903 ccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactcta 30651961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 40846689 - 40846631
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  40846689 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggatccccacactcta 40846631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 19896636 - 19896690
Alignment:
Q  30 gaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttga 83  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  19896636 gaagagagaaagtgtttccgacaactcaatagaaactttttggtgtaatttttga 19896690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 25496486 - 25496433
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  25496486 atttaaacactactaatgtgtgtgttctattttatgtgggacctccacactcta 25496433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 28603764 - 28603814
Alignment:
Q  78 ttttgaactaggtgagctctccttttatagagagagtttgtaactaatttg 128  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  28603764 ttttgaactatgtgagctctctttttatagggagagtttgtaactaatttg 28603814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 24537124 - 24537072
Alignment:
Q  353 tttaaacactactaatgt--gtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  24537124 tttaaacactactaatgtatgtgttatattttatgtgggacccccacactcta 24537072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 25477800 - 25477719
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaa 84  Q
    |||||||| ||||| ||||||||| | ||||||||||| || |  |||||||||||||||||| ||||||||  ||||||||    
T  25477800 actcgtcaacacaagtcaagaaagagagaagagagaaatagctcccgacaactcaatgaaactctttggtgtgttttttgaa 25477719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 29678347 - 29678406
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaa 63  Q
    |||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||||    
T  29678347 actcgtcaacacaagtcaagaaagggagaagagagaaagag-ttccgacaactcaatgaaa 29678406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 12797923 - 12797977
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacc-cccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||||||||    
T  12797923 atttaaacactactaatgtgtgtgttctattttatgtgggacctcccacactcta 12797977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 17968070 - 17968013
Alignment:
Q  347 ccactatttaaacactactaat--gtgtgttctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  17968070 ccacaatttaaacactactaatatgtgtgttctattttatgtggga-ccccacactcta 17968013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 31329051 - 31329109
Alignment:
Q  347 ccactatttaaacactactaatgtgt--gttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||| ||||  ||||||||||| |||||||| ||||||||||    
T  31329051 ccactatttaaacactactaacgtgtttgttctattttacgtgggacctccacactcta 31329109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 31335772 - 31335830
Alignment:
Q  347 ccactatttaaacactactaatgtgt--gttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||| ||||  ||||||||||| |||||||| ||||||||||    
T  31335772 ccactatttaaacactactaacgtgtttgttctattttacgtgggacctccacactcta 31335830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 42925923 - 42925841
Alignment:
Q  207 aactaacgaaggaaagataggaaatttagttgaattc--aatcttatcacaacattagctaaaattatgggaagtaatatcca 287  Q
    |||||| |||||| ||| ||| |||| ||||| ||||  |||||||||||||||| | ||||||||||||||||| |||||||    
T  42925923 aactaatgaaggacagacagggaattcagttggattctcaatcttatcacaacataacctaaaattatgggaagtgatatcca 42925841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 12361238 - 12361284
Alignment:
Q  347 ccactatttaaacactactaatgtgtgttctattttatgtgggaccc 393  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  12361238 ccacaatttaaacactactaatgtgtcttctattttatgtggaaccc 12361284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 17453099 - 17453049
Alignment:
Q  24 aagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    ||||| |||||||||||||||| ||||||||||||| ||||| ||||||||    
T  17453099 aagggagaagagagaaagagttctcgacaactcaataaaactctttggtgt 17453049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 29678672 - 29678725
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||    
T  29678672 atttaaacactactaatgtgtgtgttctattttatgtgggatccctacactcta 29678725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 30651524 - 30651586
Alignment:
Q  24 aagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    ||||| ||||||||||||||||  |||||||||||| ||||| ||||||||  ||||||||||    
T  30651524 aagggagaagagagaaagagttcccgacaactcaataaaactctttggtgtgttttttgaact 30651586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 44630769 - 44630727
Alignment:
Q  161 agctcaagtaacaaactaatcgaataagttcaaaaagaaacaa 203  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  44630769 agctcaagtaacaaactaatcggataagttcaaaaaaaaacaa 44630727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 15446389 - 15446341
Alignment:
Q  347 ccactatttaaacactactaatgt--gtgttctattttatgtgggaccc 393  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||    
T  15446389 ccacaatttaaacactactaatgtatgtgttctattttatgtgggaccc 15446341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 44630555 - 44630508
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacc 392  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||    
T  44630555 ccactatttaaacaatactaatgtgtgtgttctattttatgtgggacc 44630508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 17974457 - 17974411
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggac 391  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||    
T  17974457 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggac 17974411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 20101752 - 20101699
Alignment:
Q  352 atttaaacactactaatgtgt--gttctattttatgtgggacccccacactcta 403  Q
    ||||||| |||||||||||||  |||||||||||||||| ||||| ||||||||    
T  20101752 atttaaatactactaatgtgtatgttctattttatgtggaaccccgacactcta 20101699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 25477391 - 25477338
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  ||||||||||||  |||| ||||||||||    
T  25477391 atttaaacactactaatgtgtgtgttctattttatgtaagaccaccacactcta 25477338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 25496826 - 25496785
Alignment:
Q  5 tcgtcagcacaaatcaagaaagggggaagagagaaagagttt 46  Q
    |||||| ||||| ||||||||||| |||||||||||||||||    
T  25496826 tcgtcaacacaagtcaagaaagggagaagagagaaagagttt 25496785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 32080388 - 32080424
Alignment:
Q  367 atgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  32080388 atgtgtgttctattttatgtgggacctccaaactcta 32080424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 9726255 - 9726041
Alignment:
Q  7 gtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttata 106  Q
    |||| ||||| |||| ||| || ||||||||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |    
T  9726255 gtcaacacaagtcaaaaaatggagaagagagaaagagtttccgacaattcaatgaaactctttggtgtgatttttgaactaggtgagctctccttttaca 9726156  T
Q  107 gagagagtttgtaactaatttgaagaaac-----------------ttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagt 189  Q
    | |||||||||||||||||||| ||||||                 ||||||||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  9726155 gggagagtttgtaactaatttggagaaacttgagaattaagtaaatttaaaaattaagcaacccacatatcagctcaaataacaaactaatcggataagt 9726056  T
Q  190 tcaaaaagaaacaaa 204  Q
    | |||||||||||||    
T  9726055 ttaaaaagaaacaaa 9726041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 35679394 - 35679250
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    ||||||||  |||| ||||||| ||| ||||| ||||||||||  |||||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  35679394 actcgtcaatacaagtcaagaaggggagaagaaagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaactaggtgagctctccttt 35679295  T
Q  103 tatagagagagtttgtaactaatttgaagaaacttaaaaattaag 147  Q
    ||||| |||||||||||||||||||| ||| |||||| |||||||    
T  35679294 tatagggagagtttgtaactaatttggagagacttaagaattaag 35679250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 4872491 - 4872633
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttt 102  Q
    |||||||| ||||| ||||||| ||| ||||||||||||||||  |||||||||||||||||| |||||| | |||||||||||| |||| |||| ||||    
T  4872491 actcgtcaacacaagtcaagaa-gggagaagagagaaagagttcccgacaactcaatgaaactctttggtatgatttttgaactaagtgaactcttcttt 4872589  T
Q  103 tatagagagagtttgtaactaatttgaagaaacttaaaaattaa 146  Q
    ||||| |||||||||||||||||||| |||||||||| ||||||    
T  4872590 tatagggagagtttgtaactaatttggagaaacttaagaattaa 4872633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 20180661 - 20180578
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||| ||| ||||  |||||||||||||||||| |||||||| |||||||||||    
T  20180661 actcgtcaacacaagtcaagaaagggagaagagataaacagttcccgacaactcaatgaaactctttggtgtgatttttgaact 20180578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 35679242 - 35679171
Alignment:
Q  134 acttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaatc 206  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||  |||||||||||||||| ||||||    
T  35679242 acttaaaaattaagcaaccca-agatcaactcaagtaacaaactaatcagataagttcaaaaagaagcaaatc 35679171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 37248306 - 37248225
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||| | ||||||||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  37248306 actcgtcaacacaagtcaagaaagagagaagagagaaagagttcccgacaactcaatgaaactctttggtgt--tttttgaact 37248225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 6154539 - 6154481
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  6154539 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 6154481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 7452744 - 7452802
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  7452744 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 7452802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 26668267 - 26668325
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  26668267 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 26668325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 26939864 - 26939922
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  26939864 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 26939922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 36430512 - 36430565
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  36430512 atttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 36430565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 4872636 - 4872700
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaa 196  Q
    ||||||||||||||||||||||||  | |||||||||||||||||| |||| ||||||| |||||    
T  4872636 aaacttaaaaattaagcaacccacgtaccagctcaagtaacaaactgatcggataagttaaaaaa 4872700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 37247906 - 37247848
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  37247906 ccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactcta 37247848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 10759463 - 10759410
Alignment:
Q  352 atttaaacactactaatgtgt--gttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  10759463 atttaaacactactaatgtgtctgttctattttatgtgggacccctacactcta 10759410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 40148487 - 40148574
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtga 92  Q
    |||||||| ||||| ||||||||||| |||||||||  |||||  |||||||||||||||||| ||| ||||  ||||||||||| ||||    
T  40148487 actcgtcaacacaagtcaagaaagggagaagagaga--gagttcccgacaactcaatgaaactctttcgtgtgttttttgaactaagtga 40148574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 6511705 - 6511655
Alignment:
Q  352 atttaaacactactaatgtgtg--ttctattttatgtgggacccccacact 400  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  6511705 atttaaacactactaatgtgtgagttctattttatgtgggactcccacact 6511655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 29167080 - 29167022
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||||| |||||| |||||||||    
T  29167080 ccacaatttaaacactactaatgtgtgtgttctattttatgtaggaccctcacactcta 29167022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 35679005 - 35678959
Alignment:
Q  347 ccactatttaaacactactaatgt--gtgttctattttatgtgggac 391  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||    
T  35679005 ccactatttaaacactactaatgtgtgtgttctattttatgtgggac 35678959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 36424627 - 36424685
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| |||||| |||||||||||||  |||||||||||||||| |||||||||||||||    
T  36424627 ccacaatttaagcactactaatgtgtgtgttctattttatgtgagacccccacactcta 36424685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 37646164 - 37646104
Alignment:
Q  347 ccactatttaaacactactaa----tgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||| |||    ||||||||||||||||||||||||||||||||||||    
T  37646164 ccacaatttaaacactaataatatgtgtgtgttctattttatgtgggacccccacactcta 37646104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 4872872 - 4872929
Alignment:
Q  348 cactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||| ||||  ||||||||||||| ||| ||||||||||||||    
T  4872872 cactatttaaacactactattgtgtgtgttctattttatatggaacccccacactcta 4872929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 12104048 - 12104101
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  || |||||||||||||||||||| |||||    
T  12104048 atttaaacactactaatgtgtgtgttccattttatgtgggacccccactctcta 12104101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 39519005 - 39519067
Alignment:
Q  24 aagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    ||||| ||||||||||||||||  |||||||||||| ||||| ||||||||  ||||||||||    
T  39519005 aagggagaagagagaaagagttcccgacaactcaataaaactctttggtgtgttttttgaact 39519067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 17550960 - 17550863
Alignment:
Q  82 gaactaggtgagctctccttttatagagagagtttgtaactaatttgaag----aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaac 176  Q
    |||||||| ||||||||||||||||| |||||||  ||| |||| || ||    |||||||||||||||||||||| || || || |||||||||||||    
T  17550960 gaactaggagagctctccttttatag-gagagttcctaattaatctggagaagtaaacttaaaaattaagcaacccgcagattagttcaagtaacaaac 17550863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 12103617 - 12103686
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| |||| |||||| |||||||||  |||||  |||||||||||||||||| ||||||||    
T  12103617 actcgtcaacacaagtcaataaagggagaagagaga--gagttcccgacaactcaatgaaactatttggtgt 12103686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 40148837 - 40148880
Alignment:
Q  352 atttaaacactactaatgtgt--gttctattttatgtgggaccc 393  Q
    |||||||||||||||||||||  |||||||||||||||||||||    
T  40148837 atttaaacactactaatgtgtttgttctattttatgtgggaccc 40148880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 403
Target Start/End: Complemental strand, 23757248 - 23757213
Alignment:
Q  368 tgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23757248 tgtgtgttctattttgtgtgggacccccacactcta 23757213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 403
Target Start/End: Complemental strand, 23822704 - 23822669
Alignment:
Q  368 tgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23822704 tgtgtgttctattttgtgtgggacccccacactcta 23822669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 37537045 - 37536986
Alignment:
Q  347 ccactatttaaacactactaat----gtgtgttctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||    |||||||||||||||||||||| ||||||||||||    
T  37537045 ccacaatttaaacactactaatatgtgtgtgttctattttatgtggga-ccccacactcta 37536986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 403
Target Start/End: Original strand, 39519397 - 39519432
Alignment:
Q  368 tgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||| |||||||||||||||||    
T  39519397 tgtgtgttctattttatgcgggacccccacactcta 39519432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 17159375 - 17159424
Alignment:
Q  356 aaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||  ||||||||||||||||| |||||| ||||    
T  17159375 aaacactactaatgtgtgtcttctattttatgtgggacacccacattcta 17159424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 17162851 - 17162904
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||||||||| |||||||||  |||||||||||||||||||| |||||| ||||    
T  17162851 atttaaacaccactaatgtgtgtgttctattttatgtgggactcccacattcta 17162904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 25689077 - 25689011
Alignment:
Q  81 tgaactaggtgagctctccttttatagagagagtttgtaactaatttgaagaaacttaaaaattaag 147  Q
    ||||||||| |||||||||||||||||  | |||||||||| |||  | |||||||||| |||||||    
T  25689077 tgaactaggcgagctctccttttataggtaaagtttgtaacaaatccgtagaaacttaataattaag 25689011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 15149660 - 15149701
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgggaccc 393  Q
    |||||||||||| |||||||||||||||||||| | ||||||    
T  15149660 atttaaacactattaatgtgtgttctattttatataggaccc 15149701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 15413828 - 15413783
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgggacccccac 397  Q
    ||||||||||||||||||| ||||  |||||||||| |||||||||    
T  15413828 atttaaacactactaatgtatgttgaattttatgtgagacccccac 15413783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 16639061 - 16639000
Alignment:
Q  23 aaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaa 84  Q
    |||||| |||||||||||||||| || ||||| |||| ||||||||| |||||  |||||||    
T  16639061 aaagggagaagagagaaagagttctcaacaacccaataaaacttttttgtgtatgttttgaa 16639000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 16807806 - 16807753
Alignment:
Q  94 ctctccttttatagagagagtttgtaactaatttgaagaaacttaaaaattaag 147  Q
    ||||| |||||||| || |||||||||||||  ||||||||||||| |||||||    
T  16807806 ctctcattttatagggaaagtttgtaactaaactgaagaaacttaagaattaag 16807753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Original strand, 23689083 - 23689116
Alignment:
Q  368 tgtgtgttctattttatgtgggacccccacactc 401  Q
    ||||||||||||||||||||||| ||||||||||    
T  23689083 tgtgtgttctattttatgtgggatccccacactc 23689116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 25689009 - 25688964
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatca-gctcaagtaacaaac 176  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||    
T  25689009 aaacttaaaagttaagcaacccacaaatcaggttcaagtaacaaac 25688964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 9725874 - 9725823
Alignment:
Q  347 ccactatttaaacactactaatgtgtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||     ||||||||||||||||||||||||  ||||||||||    
T  9725874 ccactatttaaacact-----tgtgtgttctattttatgtgggacatccacactcta 9725823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 389
Target Start/End: Complemental strand, 20180255 - 20180216
Alignment:
Q  352 atttaaacactactaatgt--gtgttctattttatgtggg 389  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  20180255 atttaaacactactaatgtgtgtgttctattttatgtggg 20180216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 23688763 - 23688827
Alignment:
Q  83 aactaggtgagctctccttttatagagagagtttgtaactaatttgaagaaacttaaaaattaag 147  Q
    ||||||| |||||||||||||||||  | |||||||||| ||| |  |||||||||| |||||||    
T  23688763 aactaggcgagctctccttttatagtaaaagtttgtaacaaatctagagaaacttaagaattaag 23688827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 19674385 - 19674594
Alignment:
Q  12 cacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttatagagag 111  Q
    ||||| ||||||||||||||||||||||||||||  ||||| |||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||     
T  19674385 cacaagtcaagaaagggggaagagagaaagagttcccgacagctcaatgaaactctttggtgtgatttttgaactaggtgagctctctttttatagggat 19674484  T
Q  112 agtttgtaactaatttgaag-----------------aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaa 194  Q
    | ||||||||||||||| ||                 ||||||||||||||||||||||| | |||| ||||||| |||||||| ||| |||||||||||    
T  19674485 attttgtaactaatttggagaaacttaagaatcaagtaaacttaaaaattaagcaacccatagatcaactcaagttacaaactattcggataagttcaaa 19674584  T
Q  195 aagaaacaaa 204  Q
    ||||||||||    
T  19674585 aagaaacaaa 19674594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 4156857 - 4156774
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||| | ||||| || |||||| | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  4156857 actcgttaacacaagtctagaaagagagaagagagaaagagttcccgacaactcaatgaaactttttggtgtaatttttgaact 4156774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 12689721 - 12689795
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaatc 206  Q
    ||||||||||||||||||||||||| || |||||||||| ||||||||||  ||||||| |||||||||||||||    
T  12689721 aaacttaaaaattaagcaacccacagataagctcaagtatcaaactaatcagataagttaaaaaagaaacaaatc 12689795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 12799432 - 12799337
Alignment:
Q  30 gaagagagaaagagttttcgacaactcaatgaaactttttggtgta-atttttgaactaggtgagctctccttttatagagagagtttgtaactaat 125  Q
    ||||||||||||||||||| |||| |||||  || ||||||||||  |||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  12799432 gaagagagaaagagttttcaacaattcaatagaa-tttttggtgtgtattttttaactaggtgaactctccttttatagggagagtttgtaactaat 12799337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 25313959 - 25313875
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaacta 87  Q
    |||||||| ||||| |||||||||||  |||| ||||||||||  |||||||||||||||||| ||||||||| |||||||||||    
T  25313959 actcgtcaacacaagtcaagaaagggataagatagaaagagttcccgacaactcaatgaaactctttggtgtattttttgaacta 25313875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 26201453 - 26201369
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaacta 87  Q
    |||||||| ||||| |||||||||||  |||| ||||||||||  |||||||||||||||||| ||||||||| |||||||||||    
T  26201453 actcgtcaacacaagtcaagaaagggataagatagaaagagttcccgacaactcaatgaaactctttggtgtattttttgaacta 26201369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 16835664 - 16835581
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  16835664 actcgtcaacacaagtcaagagagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaact 16835581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 11534203 - 11534129
Alignment:
Q  12 cacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    ||||| ||||||||||| ||||||||||||||||| | |||||||||||||||| ||||||||  ||||||||||    
T  11534203 cacaagtcaagaaagggagaagagagaaagagtttcccacaactcaatgaaactctttggtgtgttttttgaact 11534129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 20747809 - 20747725
Alignment:
Q  1 aaactcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||||| | ||| ||||||||||| |||||||||||||| || |||||||||||||||||| |||||||| |||||| ||||    
T  20747809 aaactcgtcaacgcaagtcaagaaagggagaagagagaaagag-ttccgacaactcaatgaaactctttggtgtgattttttaact 20747725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 22610129 - 22610246
Alignment:
Q  30 gaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaactaatttga 129  Q
    ||||||||||| | || |||||||||||||  |||| ||  |||   ||||| ||| | |||||||||| |||||||||||||||||||||||||| ||     
T  22610129 gaagagagaaaaatttctcgacaactcaatagaactcttcagtgcgtttttttaaccaagtgagctctctttttatagagagagtttgtaactaatctgg 22610228  T
Q  130 agaaacttaaaaattaag 147  Q
    |||||||||| |||||||    
T  22610229 agaaacttaataattaag 22610246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 14509577 - 14509645
Alignment:
Q  18 tcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  14509577 tcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaact 14509645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 11428549 - 11428616
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttg 70  Q
    |||||||| || || ||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  11428549 actcgtcaacataagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactttttg 11428616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 16835269 - 16835211
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  16835269 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 16835211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 17963665 - 17963607
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  17963665 ccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactcta 17963607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 33687153 - 33687082
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||| ||||||||  |||||||||||||||||| ||||||||    
T  33687153 actcgtcaacacaagtcaagaaagggagaagagaaaaagagttcccgacaactcaatgaaactctttggtgt 33687082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 2699217 - 2699164
Alignment:
Q  352 atttaaacactactaatgtgtg--ttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  2699217 atttaaacactactaatgtgtgaattctattttatgtgggacccccacactcta 2699164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 6407367 - 6407286
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaa 84  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  | |||||||||||||||| |||| |||  ||||||||    
T  6407367 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccaacaactcaatgaaactctttgatgtgttttttgaa 6407286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 2699599 - 2699516
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| |||| |||||| ||||||||||||||||  | |||||| ||||||||| ||||||||  ||||||||||    
T  2699599 actcgtcaacacaagtcaaaaaagggagaagagagaaagagttcccaacaactaaatgaaactatttggtgtgttttttgaact 2699516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 12689567 - 12689634
Alignment:
Q  7 gtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||| ||||| |||| |||| | ||||||||||||||||| |||||||||||||||||| ||||||||    
T  12689567 gtcaacacaagtcaataaagagagaagagagaaagagtttccgacaactcaatgaaactctttggtgt 12689634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 11559713 - 11559639
Alignment:
Q  12 cacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    ||||| ||||||||||| ||||||||||||||||    |||||||||||||||| ||||||||  ||||||||||    
T  11559713 cacaagtcaagaaagggagaagagagaaagagttccacacaactcaatgaaactctttggtgtgttttttgaact 11559639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 19994486 - 19994433
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  19994486 atttaaacactactaatgtgtgtgttctattttacgtgggacccccacactcta 19994433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 20747399 - 20747346
Alignment:
Q  352 atttaaacactactaatgtgt--gttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  20747399 atttaaacactactaatgtgtaagttctattttatgtaggacccccacactcta 20747346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 17599983 - 17600040
Alignment:
Q  30 gaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaact 86  Q
    |||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||    
T  17599983 gaagagagaaagagttttcgacaactcaatagaaactctttagtgtgatttttgaact 17600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 12405842 - 12405786
Alignment:
Q  29 ggaagagagaaagagttttcgacaactcaa-tgaaactttttggtgtaatttttgaa 84  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||  ||||||||    
T  12405842 ggaagagagaaagagttctcgacaactcaattgaaactttttggtgtgttttttgaa 12405786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 6406967 - 6406909
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  |||||||||||  ||||||||||||||||    
T  6406967 ccacaatttaaacactactaatgtgtgtgttctattttatgcaggacccccacactcta 6406909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 19994882 - 19994820
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaact 86  Q
    |||| |||||||||||||||| || ||||||||||  ||||| ||||||||||||||||||||    
T  19994882 agggagaagagagaaagagttctctacaactcaatataaactctttggtgtaatttttgaact 19994820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 12689961 - 12690004
Alignment:
Q  350 ctatttaaacactactaa--tgtgtgttctattttatgtgggac 391  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  12689961 ctatttaaacactactaatgtgtgtgttctattttatgtgggac 12690004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 19674766 - 19674817
Alignment:
Q  351 tatttaaacactactaatgtg--tgttctattttatgtgggacccccacact 400  Q
    ||||||||||||||| |||||  ||||||||||||||| |||||||||||||    
T  19674766 tatttaaacactactgatgtgtgtgttctattttatgtcggacccccacact 19674817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 11570241 - 11570167
Alignment:
Q  12 cacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    ||||| ||||||||| | ||||||||||||||||    | |||||||||||||| ||||||||  ||||||||||    
T  11570241 cacaagtcaagaaagtgagaagagagaaagagttccgtagaactcaatgaaactctttggtgtgttttttgaact 11570167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 11613005 - 11612952
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  | |||||||||||||||| | ||||||||    
T  11613005 atttaaacactactaatgtgtgtgttttattttatgtgggacctcaacactcta 11612952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 25313575 - 25313522
Alignment:
Q  352 atttaaacactactaatgt--gtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||| |  ||||||||||||||||| ||||| |||||||||    
T  25313575 atttaaacactactaatatatgtgttctattttatgtgtgacccgcacactcta 25313522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 26201069 - 26201016
Alignment:
Q  352 atttaaacactactaatgt--gtgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||| |  ||||||||||||||||| ||||| |||||||||    
T  26201069 atttaaacactactaatatatgtgttctattttatgtgtgacccgcacactcta 26201016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 5856979 - 5857023
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccc 394  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||    
T  5856979 atttaaacactactaatgtgtatgttctagtttatgtgggacccc 5857023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 11428952 - 11429004
Alignment:
Q  353 tttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||| ||||| |||||||||  ||||||| |||||||||||||||||||||    
T  11428952 tttaaatactacaaatgtgtgtgctctatttaatgtgggacccccacactcta 11429004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 394
Target Start/End: Complemental strand, 11533803 - 11533759
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccc 394  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||    
T  11533803 atttaaacactaccaatgtgtgtgttctattttatgtgggacccc 11533759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 394
Target Start/End: Complemental strand, 11559313 - 11559269
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccc 394  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||    
T  11559313 atttaaacactaccaatgtgtgtgttctattttatgtgggacccc 11559269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 12689658 - 12689719
Alignment:
Q  86 taggtgagctctccttttatagagagagtttgtaactaatttgaagaaacttaaaaattaag 147  Q
    ||| |||||||||||||||||  |||||||| ||| | ||||| |||||||||| |||||||    
T  12689658 tagatgagctctccttttataaggagagtttataattgatttggagaaacttaagaattaag 12689719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 17281322 - 17281289
Alignment:
Q  88 ggtgagctctccttttatagagagagtttgtaac 121  Q
    |||||||||||||||||||| |||||||||||||    
T  17281322 ggtgagctctccttttatagggagagtttgtaac 17281289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 17600391 - 17600424
Alignment:
Q  370 tgtgttctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||| |||||||||    
T  17600391 tgtgttctattttatgtgggaccctcacactcta 17600424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 147876 - 147755
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaacta 123  Q
    |||||||||||| |||||||| ||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  147876 agggggaagagataaagagttctcgacaattcaatagaaactctttggtgtgatttttgaactaggtgagctctccttttatatggagagtttgtaacta 147777  T
Q  124 atttgaagaaacttaaaaatta 145  Q
    ||||| |||||||||| |||||    
T  147776 atttggagaaacttaagaatta 147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 147751 - 147679
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    |||||||||||||||||||| |||| || |||||||||||||||||||| | | |||||||||||||||||||    
T  147751 aaacttaaaaattaagcaactcacagataagctcaagtaacaaactaattggacaagttcaaaaagaaacaaa 147679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 22714467 - 22714283
Alignment:
Q  37 gaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaactaatttgaagaaact 136  Q
    ||||||||| |||||||||||||  |||| ||| ||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||| |||||||    
T  22714467 gaaagagttctcgacaactcaatagaactcttttgtgtaatttttgaactatgtgagctctccttttatagggggagtttgtaaataatttggagaaact 22714368  T
Q  137 taa-----------------aaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    |||                 ||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||    
T  22714367 taagaattaagtaaacttagaaattaagcaacccacagatcagctcaagtaacaaactaatcgcataagctaaaaaagaaacaaa 22714283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 7002261 - 7002383
Alignment:
Q  25 agggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtgagctctccttttatagagagagtttgtaactaa 124  Q
    |||| ||| |||||||||||| |||||||||||||  |||| ||| || || |||||||||||||||||||||||||||||||||| ||||||||| |||    
T  7002261 agggagaacagagaaagagttctcgacaactcaatagaactcttttgtatattttttgaactaggtgagctctccttttatagagatagtttgtaaataa 7002360  T
Q  125 tttgaagaaacttaaaaattaag 147  Q
    |||| |||||||||| |||||||    
T  7002361 tttggagaaacttaataattaag 7002383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 44925427 - 44925338
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaactaggtga 92  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||| |||  ||| ||||||| ||||    
T  44925427 actcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttgttgttttttgtgaactaagtga 44925338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 17953477 - 17953398
Alignment:
Q  5 tcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaa 84  Q
    |||||| ||||| ||||||||||| |||||||||||||||| |||||||||||||  |||| |||||||| |||||||||    
T  17953477 tcgtcaacacaagtcaagaaagggagaagagagaaagagttctcgacaactcaatagaactctttggtgtgatttttgaa 17953398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 38181748 - 38181677
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  38181748 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 38181677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 40125397 - 40125318
Alignment:
Q  7 gtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  40125397 gtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaact 40125318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 1808036 - 1808119
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| |||||||| || ||||||| ||||||||  | |||||||||||||||||||||||||  ||||||||||    
T  1808036 actcgtcaacacaagtcaagaaatggagaagagataaagagttcccaacaactcaatgaaactttttggtgtgttttttgaact 1808119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 1910460 - 1910389
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||  ||||||||||||||||  |||||||||||||||||| ||||||||    
T  1910460 actcgtcaacacaagtcaagaaaggaagaagagagaaagagttcccgacaactcaatgaaactctttggtgt 1910389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 15951057 - 15950975
Alignment:
Q  4 ctcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaacta 87  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||| | ||||||||  |||||||||||    
T  15951057 ctcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaattctttggtgt-gtttttgaacta 15950975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 19167237 - 19167320
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||| ||||||||  | |||||||||||||||| ||||||||  ||||||||||    
T  19167237 actcgtcaacacaagtcaagaaagggagaagagataaagagttcccaacaactcaatgaaactctttggtgtgttttttgaact 19167320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 33417120 - 33417191
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||| ||||    
T  33417120 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttagtgt 33417191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 17020943 - 17021012
Alignment:
Q  5 tcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||| ||||| |||| |||||| ||||||||||||||||| |||||||| ||||||||| ||||||||    
T  17020943 tcgtcaacacaagtcaaaaaagggagaagagagaaagagtttccgacaacttaatgaaactctttggtgt 17021012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 17551380 - 17551449
Alignment:
Q  5 tcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||| ||||| |||| |||||| ||||||||||||||||| |||||||| ||||||||| ||||||||    
T  17551380 tcgtcaacacaagtcaaaaaagggagaagagagaaagagtttccgacaacttaatgaaactctttggtgt 17551449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 40125001 - 40124943
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| |||||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  40125001 ccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactcta 40124943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 26780098 - 26780151
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||||||    
T  26780098 atttaaacactactaatgtgtgtgttctattttatgtgggacacccacactcta 26780151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 28559218 - 28559165
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  28559218 atttaaacactactaatgtgtgtgttctattttatgtgggacctccacactcta 28559165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 7002400 - 7002453
Alignment:
Q  147 gcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaa 200  Q
    |||||||||||||||||||||||||||||| ||||  ||||||| |||||||||    
T  7002400 gcaacccacaaatcagctcaagtaacaaacgaatcagataagtttaaaaagaaa 7002453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 2966579 - 2966632
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||| |||||||| |||||||||    
T  2966579 atttaaacactactaatgtgtgtgttctattttatatgggaccctcacactcta 2966632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 17021250 - 17021302
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  17021250 atttaaacactactaatgtgtgtgttctattttatgtggga-ccccacactcta 17021302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 17551687 - 17551739
Alignment:
Q  352 atttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  17551687 atttaaacactactaatgtgtgtgttctattttatgtggga-ccccacactcta 17551739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 23548096 - 23548034
Alignment:
Q  30 gaagagagaaagagttttcgacaactcaat-gaaactttttggtgtaatttttgaactaggtg 91  Q
    ||||| |||||||||| ||||| ||||||| |||||| |||||||| ||||||||||||||||    
T  23548096 gaagatagaaagagttctcgaccactcaatagaaactctttggtgtgatttttgaactaggtg 23548034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 44925023 - 44924970
Alignment:
Q  352 atttaaacactactaatgtgtgtt--ctattttatgtgggacccccacactcta 403  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||    
T  44925023 atttaaacactactaatgtgtgttttctattttatgtgggacctccaaactcta 44924970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 18875892 - 18875823
Alignment:
Q  5 tcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||| ||||| | ||||||| | ||||||||||||||||  |||||||||||||||||| | ||||||    
T  18875892 tcgtcaacacaagttaagaaagagagaagagagaaagagttcccgacaactcaatgaaactctatggtgt 18875823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 15875198 - 15875142
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaat 59  Q
    |||||||| ||||| ||||||||| | ||||||||||| |||| |||||||||||||    
T  15875198 actcgtcaacacaagtcaagaaagtgagaagagagaaaaagttatcgacaactcaat 15875142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 7002634 - 7002692
Alignment:
Q  347 ccactatttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||| |||  ||||||||||||| || ||||||||||||    
T  7002634 ccacaatttaaacactactaatgtatgtattctattttatgtgagatccccacactcta 7002692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 28564397 - 28564347
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacact 400  Q
    |||||||||||||||||||||||  |||||||||||||| ||| |||||||    
T  28564397 atttaaacactactaatgtgtgtgttctattttatgtggaacctccacact 28564347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 33417519 - 33417577
Alignment:
Q  347 ccactatttaaacactactaa--tgtgtgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||  |||||||||||||||||||| |||||  ||||||||    
T  33417519 ccacaatttaaacactactaatgtgtgtgttctattttatgtgagacccatacactcta 33417577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 38181384 - 38181334
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacact 400  Q
    |||||||||||||||||||||||  ||||||||||||||||| | ||||||    
T  38181384 atttaaacactactaatgtgtgtgttctattttatgtgggactctcacact 38181334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 15950674 - 15950621
Alignment:
Q  352 atttaaacactactaatgtgtgt--tctattttatgtgggacccccacactcta 403  Q
    |||||||||||| ||||||||||  |||||||||||||| ||| ||||||||||    
T  15950674 atttaaacactattaatgtgtgtgttctattttatgtggcacctccacactcta 15950621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 18875487 - 18875438
Alignment:
Q  352 atttaaacactactaat--gtgtgttctattttatgtgggacccccacac 399  Q
    |||||||||||||||||  |||||||||||| ||||||||||||| ||||    
T  18875487 atttaaacactactaatatgtgtgttctattgtatgtgggacccctacac 18875438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 28864047 - 28864117
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    |||||||||||||||||||| || | |||| ||  ||||||||||||||   ||||||||||||| |||||||    
T  28864047 aaacttaaaaattaagcaactcatatatcaact--agtaacaaactaattagataagttcaaaaataaacaaa 28864117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 5884891 - 5884927
Alignment:
Q  352 atttaaacactactaatgtgtgttctattttatgtgg 388  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  5884891 atttaaacactattaatgtgtgttctatttcatgtgg 5884927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 28859379 - 28859422
Alignment:
Q  349 actatttaaacactacta--atgtgtgttctattttatgtggga 390  Q
    |||||||||| |||||||  ||||||||||||||||||||||||    
T  28859379 actatttaaatactactattatgtgtgttctattttatgtggga 28859422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 36684174 - 36684230
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaat 59  Q
    |||||||| |||||||||| |||||| ||| ||||||||||||  ||||| ||||||    
T  36684174 actcgtcaacacaaatcaataaagggagaaaagagaaagagttcccgacatctcaat 36684230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 4653 - 4736
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  4653 actcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaact 4736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 5053 - 5111
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  5053 ccacaatttaaacactactaatgtgagtgttctattttatgcgggacccccacactcta 5111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 443440 - 443366
Alignment:
Q  12 cacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgtaatttttgaact 86  Q
    ||||| ||||||||||| ||| | ||||||||||  |||||||||||||||||| ||||||||  ||||||||||    
T  443440 cacaagtcaagaaagggagaaaatagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaact 443366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 151027 - 151099
Alignment:
Q  132 aaacttaaaaattaagcaacccacaaatcagctcaagtaacaaactaatcgaataagttcaaaaagaaacaaa 204  Q
    ||||||||||||||| |||| || | |||||| |||||| ||||| ||||  |||||||||||| ||||||||    
T  151027 aaacttaaaaattaaacaactcagagatcagcgcaagtaccaaacgaatcagataagttcaaaatgaaacaaa 151099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 150959 - 150993
Alignment:
Q  81 tgaactaggtgagctctccttttatagagagagtt 115  Q
    ||||||||||||||||||||||||||| |||||||    
T  150959 tgaactaggtgagctctccttttatagggagagtt 150993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 7696 - 7767
Alignment:
Q  3 actcgtcagcacaaatcaagaaagggggaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||| ||||| ||||||||||| ||| ||||||||||||  |||||||||||||||||| ||||||||    
T  7696 actcgtcaacacaagtcaagaaagggagaaaagagaaagagttcccgacaactcaatgaaactctttggtgt 7767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 8098 - 8156
Alignment:
Q  347 ccactatttaaacactactaatgtg--tgttctattttatgtgggacccccacactcta 403  Q
    |||| ||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  8098 ccacaatttaaacactactaatgtgtgtgttctatcttatgtgggacccccacactcta 8156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 256404 - 256448
Alignment:
Q  30 gaagagagaaagagttttcgacaactcaatgaaactttttggtgt 74  Q
    |||||||||||||||| |||||||||||||  |||| ||||||||    
T  256404 gaagagagaaagagttatcgacaactcaatagaactctttggtgt 256448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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