View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10120_low_7 (Length: 426)

Name: NF10120_low_7
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10120_low_7
NF10120_low_7
[»] chr7 (1 HSPs)
chr7 (1-426)||(48092372-48092789)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 48092372 - 48092789
Alignment:
1 aagtcagataaattttgtatcaaacataagattggataaaaagtgacatgatgtaatgtggagtgtgc-----atggtaggtgcccttgtctgtctcata 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
48092372 aagtcagataaattttgtatcaaacataagattggataaaaagtgacatgatgtaatgtggagtgtgcagtgcatggtaggtgcccttgtctgtctcata 48092471  T
96 gattaactgctctttttcttctttttgttttatgatagagaaagagaagtgttctttttatctcatctcatagatctcaataaatgaggcatttcggatg 195  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48092472 gattaactgctctttttcttcgttttgttttatgatagagaaagagaagtgttctttttatctcatctcatagatctcaataaatgaggcatttcggatg 48092571  T
196 taatgataatgtagtgtatggtgggtatgttagaatcacgacgattcatacctaccatgatactaaacacaaacatatatagtttattaagatatagnnn 295  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||    | | |       
48092572 taatgttaatgtagtgtatggtgggtatgttagaatcacgaccattcacacctaccatgatactaaacacaaacatatatagtttttt----ttttgttg 48092667  T
296 nnnnaatttgttgttttatgaagtagttagctagcgtgttgattgatatatatatgttagaataataataacatttgaattttgaaatattgttgtgatg 395  Q
           |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
48092668 -------ttgttgttgtatgaagtagttagctagcgtgttgattg--atatatatgttagaataataataacatttgaattttgaaatattgttgtgatg 48092758  T
396 tttaatatcagagactatacgatcttggagc 426  Q
    |||||||||||||||||||||||||||||||    
48092759 tttaatatcagagactatacgatcttggagc 48092789  T

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