View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10120_low_9 (Length: 383)
Name: NF10120_low_9
Description: NF10120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10120_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 176 - 377
Target Start/End: Original strand, 14654145 - 14654352
Alignment:
| Q |
176 |
tgatgttcaagatgatcattatattctttaacatagacatattgacgatcaaattagaatattgatctcgaaaccataagtaacaatctttcatgtgaat |
275 |
Q |
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| T |
14654145 |
tgatgtttaagatgatcattatattctttaacatggacatattgacgatcaaattagaatattgatctcgaaaccacaagtaacaatctttcatgtgaat |
14654244 |
T |
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| Q |
276 |
ttcacgaa-------agattttaaatgtttactaaagattttttatttgtgagcatcatccttgaatttgcaccttggaggaatctcggaaagaaacatt |
368 |
Q |
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| T |
14654245 |
ttcacgaattgccccaaactcaaaat-attactgaagattttttatttgtgagcatcatccttgaatttgcaccttggaggaatctcggaaagaaacatt |
14654343 |
T |
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| Q |
369 |
tcatctcac |
377 |
Q |
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|||| |||| |
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| T |
14654344 |
tcatttcac |
14654352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 22897256 - 22897103
Alignment:
| Q |
19 |
gttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgcacatcctgccacatatcagc |
118 |
Q |
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| T |
22897256 |
gttgaatatccatagacgagttttggagtaaataaaaaattgtgttgatagaagaatccgaattcatggccgcattttgcacatcctgccacataccagc |
22897157 |
T |
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| Q |
119 |
tgacatccagacttgaatagaaaaagggcactcgaacagaaggtggttgagatc |
172 |
Q |
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| T |
22897156 |
tgacatccagacttgaatagaaaatgggcactcgaacagaaggtggttgagatc |
22897103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 36306775 - 36306928
Alignment:
| Q |
19 |
gttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgcacatcctgccacatatcagc |
118 |
Q |
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| T |
36306775 |
gttgaatatccatagacgagttttggagtaaatagaaaactttgttgatagaagagtctgaattcattgccgcattttgcacatcctgccacataccagc |
36306874 |
T |
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| Q |
119 |
tgacatccagacttgaatagaaaaagggcactcgaacagaaggtggttgagatc |
172 |
Q |
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| T |
36306875 |
tgacatccaaacttgaatagaaaacgggcactcgaacagaaggtggttgagatc |
36306928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 16878713 - 16878866
Alignment:
| Q |
19 |
gttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgcacatcctgccacatatcagc |
118 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||| |||| | ||| || |||||||||||||||||||||||||||||||||||| |||| |
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| T |
16878713 |
gttgaatatccatagacgagttttggagtaaatagaaaactgtgttgacagcagagtccgaattcatggccgcattttgcacatcctgccacataccagc |
16878812 |
T |
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| Q |
119 |
tgacatccagacttgaatagaaaaagggcactcgaacagaaggtggttgagatc |
172 |
Q |
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||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
16878813 |
tgacatccaaacttgaatagaaaacgggcactcgaatagatggtggttgagatc |
16878866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 28384506 - 28384359
Alignment:
| Q |
19 |
gttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgcacatcctgccacatatcagc |
118 |
Q |
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||||||||| |||||||||||||||||||||||||| || ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28384506 |
gttgaatatccatagacgagttttggagtaaatagagaactgtgttgataacagagtctgaattcatggccgcattttgcacatcctgccacatatcagc |
28384407 |
T |
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| Q |
119 |
tgacatccagacttgaatagaaaaagggcactcgaacagaaggtggttgagatc |
172 |
Q |
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||||||||| ||||| ||| ||||||||||||||||||||||||||||| |
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| T |
28384406 |
tgacatccaaacttg------aaatgggcactcgaacagaaggtggttgagatc |
28384359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 38489608 - 38489759
Alignment:
| Q |
20 |
ttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgcacatcctgccacatatcagct |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||| | ||||| ||||||||||||||||||| | ||||||| ||||| |
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| T |
38489608 |
ttgaatatccatagacgagttttggagtaaatagaaaactgtgttgatagaagagttcgaatttatggccgcattttgcacat-ataccacataccagct |
38489706 |
T |
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| Q |
120 |
gacatccagacttgaatagaaaaagggcactcgaacagaaggtggttgagatc |
172 |
Q |
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|||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
38489707 |
gacatccaaacttgaatagaaaacgggcactcgaacataaggtggttgagatc |
38489759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 26334413 - 26334474
Alignment:
| Q |
36 |
gagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttg |
97 |
Q |
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|||||||||||||||||||| ||||| |||| | |||||| ||||| ||||| |||||||| |
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| T |
26334413 |
gagttttggagtaaatagaagattgtattgacagcagaatccgaatttatggctgcattttg |
26334474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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