View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_high_1 (Length: 703)
Name: NF10121_high_1
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 18 - 691
Target Start/End: Original strand, 10341316 - 10341978
Alignment:
| Q |
18 |
agattgtctgagatccactttgagattgagttgagcttatggtgtcgtccgagtctcgaatagatcattcactaaacgcacattggtttttagagtgctc |
117 |
Q |
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| T |
10341316 |
agattgtctgagatccactttgagattgagttgagcttatggtgtcgtcggagtctcgaatagatcattcactaaacgcacattggtttttagagtactc |
10341415 |
T |
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| Q |
118 |
gagtgattgagctcaagtgattaatgagtttcacttaaggacagatcgttcaggagaatccaaattcaaatcctaaatggaataattcatagccagactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10341416 |
gagtgattgagctcaagtgattaatgagtttcacttaaggacagatcgttcacgagaatccgaattcaaatcctaaatggaataattcatagccagactt |
10341515 |
T |
|
| Q |
218 |
tacatgtcacttgtcttctaactgaatttcagattaccaaaatatgagagaaccagagggttaac---acaacaacaacaaaaatgacactattgccttc |
314 |
Q |
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| T |
10341516 |
tacatgtcacttgtcttctaactgaatttaagattaccaaaatatgagagaaccagagggttaacacaacaacaacaacaaaaatgacactattgccttc |
10341615 |
T |
|
| Q |
315 |
cattatactaggctgctagcaatagttcaaccttggtagtatagttatagagacatttccgatctcaacaacatatgtgaatattttgaagcatagtgtt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10341616 |
cattatactaggctgctagcaatagttcaaccttggtagtatagttatagagacatttccgatctcaacaacatatgtgaatat--------------tt |
10341701 |
T |
|
| Q |
415 |
atgaaagtttaacgaagatttgtctgcaactcatctcatgtctaccctgacactgttgagcttctgaaaccgaactcgccaaaacttctaaattcttata |
514 |
Q |
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| T |
10341702 |
atgaaagtttaacgaagatttgtctgcaactcatcttatgtctaccctgacactgttgagcttctgaaaccgaactcgccaaaacttctaaattcttata |
10341801 |
T |
|
| Q |
515 |
tgataataaaagtaagattatcacaatgcctacatctcgaagcaatatttctaagctacatcaaactcatttccattgtttagttagaaatttgaatatt |
614 |
Q |
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| T |
10341802 |
tgataataaaagtaagattatcacaatgcctacatctcgaagcaatatttctaagctacatcaaactcatttccattgtttagttagaaatttgaatatt |
10341901 |
T |
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| Q |
615 |
aaaccaaatttaattttcccatctccaccactgtaccttatgtcgaagtatttctaagattcaatcttgttatttga |
691 |
Q |
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| T |
10341902 |
aaaccaaatttaattttcccatctccaccactgtatcttgtgtcgaagtatttctaagattcaatcttgttatttga |
10341978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 13126424 - 13126360
Alignment:
| Q |
119 |
agtgattgagctcaagtgattaatgagtttcacttaaggacagatcgttcaggagaatccaaatt |
183 |
Q |
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|||||||||||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
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| T |
13126424 |
agtgattgagctcaagtggttaatgagtttcaccaaaggacgtatcgttcgagagaacccaaatt |
13126360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 38753592 - 38753632
Alignment:
| Q |
119 |
agtgattgagctcaagtgattaatgagtttcacttaaggac |
159 |
Q |
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|||| ||||||||||||| ||||||||||||| |||||||| |
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| T |
38753592 |
agtggttgagctcaagtggttaatgagtttcatttaaggac |
38753632 |
T |
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