View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_high_10 (Length: 422)
Name: NF10121_high_10
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 35668878 - 35668457
Alignment:
| Q |
1 |
atggtgaatgattgactagtatgacattattaaattacttaccattaactagttttcattcaatatcttatccgacttttatgaactttcccaaacaact |
100 |
Q |
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| T |
35668878 |
atggtgaatgattgactagtatgacattattaaattacttaccattaactagttttcattcaatatcttatccgacttttatgaactttcccaaacaact |
35668779 |
T |
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| Q |
101 |
gaaatgacactgtatatggagcaagaactgattgtgaaaaacaaaggaccgcatttttacaagaaatctccttgcttaaaaaaccacagtattagttgtg |
200 |
Q |
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| T |
35668778 |
gaaatgacactgtatatggagcaagaactgattgtgaaaaacaaagtaccgcatttttacaagaaatctccttgcttaaaaaaccacagtattagttgtg |
35668679 |
T |
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| Q |
201 |
aatctaaacattgtaatgaaaatcatttatccttgttttagagcttcaaaagtcaagacatcaagctaggaaagcaacagctgatatcctggcatttctc |
300 |
Q |
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| T |
35668678 |
aatctaaacattgtaatgaaaatcatttatccttgttttagagcttcaaaagtcaagacatcaagctaggaaagcaacagctgatatcctggcatttctc |
35668579 |
T |
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| Q |
301 |
aattccctttttcttgatggatttgcttaagaagagtagcagccaactttagtgttgcttgtaaacgggtctgtggatctgcatctccatcttcctgcaa |
400 |
Q |
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| T |
35668578 |
aattccctttttcttgatggatttgcttaagaagagtagcagccaactttagtgttgcttgtaaacgggtctgtggatctgcatctccatcttcctgcaa |
35668479 |
T |
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| Q |
401 |
gctattatctgccatctgttga |
422 |
Q |
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| T |
35668478 |
gctattatctgccatctgttga |
35668457 |
T |
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