View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_high_11 (Length: 404)
Name: NF10121_high_11
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 47503181 - 47503552
Alignment:
| Q |
19 |
acaaggcaattcatggagaggatgcttttgccttgcatagtgaggcaactaaatttgtgaacattaagcgcaatcaggtttatgatacacaagatttctc |
118 |
Q |
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| T |
47503181 |
acaaggcaattcatggagaggatgcttttgccttgcatagtgaggcaactaaatttgtgaacattaagcgcaatcaggtttatgatacacaagatttctc |
47503280 |
T |
|
| Q |
119 |
gtccattcccgagtctagatcattaggtgaacttcaaatggtatgaaatcaaccagtaacatatgtt----tagctaatataatgtcttgtgtttgaata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || ||||||| |
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| T |
47503281 |
gtccattcccgagtctagatcattaggtgaacttcaaatggtatgaaatcaaccagtaacatatgtttaactaactaatataatgtcttatgattgaata |
47503380 |
T |
|
| Q |
215 |
aatgttgttaccaccgtcgattgtaatatattttatggacgttaacttcacacctacaataccaaa-ttttcaaaaaataccaaatttttcaagtttgcg |
313 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47503381 |
aatgttgttacctccgtcgattgtaatatattttatggacgttaacttcacacctacaataccaaatttttcaaaaaataccaaatttttcaagtttgcg |
47503480 |
T |
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| Q |
314 |
tgatatcggagcgaagggtaatattaaagtttattagagtcacactttgtcaaggttcttggacatttgaag |
385 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47503481 |
tgatatcggagttaagggtaatattaaagtttattagagtcacactttgtcaaggttcttggacatttgaag |
47503552 |
T |
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