View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_high_14 (Length: 322)
Name: NF10121_high_14
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 33890509 - 33890802
Alignment:
| Q |
18 |
aaatgagcaaaagactcggtagtaaagatataatgtccatgcaagtggcacaattgatttgttttcattgatcaggaaagttgcaggtggcacaattgac |
117 |
Q |
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| T |
33890509 |
aaatgagcaaaaggctcggtagtaaagatataatgtccatgcaagtggcacaattgatttgttttcattgatcaggaaagttgcaggtggcacaattgac |
33890608 |
T |
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| Q |
118 |
tacaactaccactatgtttcacaacatggtcttcttcgggatctagccatcattcataatagccaagagaccgaggataaaagacatagactcataattg |
217 |
Q |
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| T |
33890609 |
tacaactaccattatgtttcacaacatggtcttcttcgggatctagccatcgttcataatagccaagagcccgaggataaaagacatagactcataattg |
33890708 |
T |
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| Q |
218 |
acacaagtggaaataatcttccctcttggtggaatgcagagaatgagtttcaaattgcagcccgcatattatccatttcaacgggtttgttcat |
311 |
Q |
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| T |
33890709 |
acacaagtgcaaataatcttccctcttggtggaatgcagagaatgagtttcaaattgcagcccgcatattatccatttcaacgggtttgttcat |
33890802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 71 - 311
Target Start/End: Original strand, 33869156 - 33869396
Alignment:
| Q |
71 |
ttgatttgttttcattgatcaggaaagttgcaggtggcacaattgactacaactaccactatgtttcacaacatggtcttcttcgggatctagccatcat |
170 |
Q |
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| T |
33869156 |
ttgatttgttttcattgatcaggaaagttgcaagtggcacaattgactacaactaccattatgttacacaacatggtcttcttcgggatctagccattcg |
33869255 |
T |
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| Q |
171 |
tcataatagccaagagaccgaggataaaagacatagactcataattgacacaagtggaaataatcttccctcttggtggaatgcagagaatgagtttcaa |
270 |
Q |
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| T |
33869256 |
agacaatagccaagaggcagaggataagaggaatagactcataattgacacaagtgcaaataatcttccttcgtggtggacttctgagaatgagtatcac |
33869355 |
T |
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| Q |
271 |
attgcagcccgcatattatccatttcaacgggtttgttcat |
311 |
Q |
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| T |
33869356 |
attaaagctcgcatattatccatatcaactggtttgttcat |
33869396 |
T |
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