View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_high_3 (Length: 627)
Name: NF10121_high_3
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Original strand, 24756838 - 24757436
Alignment:
| Q |
19 |
agaaccacctccataaacccatttaccatcatcagaaacaacaacagaattaaaagaaacatctctatgaccctctaaaacacctttcaaagtatgcaaa |
118 |
Q |
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| T |
24756838 |
agaaccacctccataaacccatttaccatcatcagaaacaacaacagaattaaaagaaacatctctatgaccctctaaaacacctttcaaagtatgcaaa |
24756937 |
T |
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| Q |
119 |
tttttcccttcttttccccatgccttaattttcccatctgcagaagcagaataaacaacccctttacatgctaccaacccattgatagcatcatcatgcg |
218 |
Q |
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| T |
24756938 |
tttttcccttcttttccccatgccttaattttcccatctgcagaagcagaataaacaatccctttacatgctaccaacccattgatagcatcatcatgcg |
24757037 |
T |
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| Q |
219 |
ccttaatggattctaaacacttcaaatcagaaacactccaaacttttagtgtcttatcccatgaccctgaataaatcaaaccattatgaacaaccaaaca |
318 |
Q |
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| T |
24757038 |
ccttaatggattctaaacacttcaaatcagaaacactccaaacttttagtgtcttatcccatgaccctgaataaatcaaaccattatgaacaaccaaaca |
24757137 |
T |
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| Q |
319 |
agaaatgctatcagcatgttcaatccataacctcttgtgatgtctcctagtttgaacataattactttgtttcataaacttccccaaatagtcttttgtt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24757138 |
agaaatgctatcagcatgttcaatccataacctcttgtgatgtctcctagtttgaacataattactttgtttcataaacttccccaaatagtcttttgtt |
24757237 |
T |
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| Q |
419 |
gttggaagcgtatcgacgagcttgaacacattctctgaacttctagaaactttccaaacacgaatcttgctatcttgatgagcagtgaaaacattgtttc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24757238 |
gttggaagcgtatcgacgagcttgaacacattctctgaacttctagaaactttccaaacacgaatcttgctatcttgatgagcagtgaaaacattgtttc |
24757337 |
T |
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| Q |
519 |
caaaagttgctagtgctttgacagatccatctccttgaccgaatttcgcaaacaaccttaaatctggttgttgccatactatgatgtctttgctctgtg |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24757338 |
caaaagttgctagtgctttgacagatccatctccttgaccgaatttcgcaaacaaccttaaatctggttgttgccatactatgatgtctttgccctgtg |
24757436 |
T |
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