View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10121_high_4 (Length: 596)
Name: NF10121_high_4
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 186 - 589
Target Start/End: Complemental strand, 14730907 - 14730504
Alignment:
| Q |
186 |
aattggtataaacatgtagatcaattgacaaatgtcaggctgaatgttgtgacccctgttcgaactaaaaatcttccatttttcgtgtgtgaatttttaa |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14730907 |
aattggtataaacatgtagatcaattgacaaatgtcaggctgaatgttgtgacccctgttcgaactaaaaatcttccatttt-cgtgtgtgaatttttaa |
14730809 |
T |
|
| Q |
286 |
gtgttattgtcannnnnnn-atctaaagtaatcgtctctgtatctcnnnnnnnaaacaaacctagcaagatgtaaacgttttgattttcgcccctaacat |
384 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14730808 |
gtgttattgtcattttttttatctaaagtaatcgtctctgtatctctttttttaaacaaacctagcaagatgtaaacgttttgattttcgcccctaacat |
14730709 |
T |
|
| Q |
385 |
aaaagcaagcctattacaaaagcatataggccgcgaatagaggatgatctggcaacatatgacattgcaaccaaataagtgcgtgttatctcatcaaaca |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14730708 |
aaaagcaagcctattacaaaagcatataggccgcgaatagaggatgatctggcaacatatgacattgcaaccaaataagtgtgtgttatctcatcaaaca |
14730609 |
T |
|
| Q |
485 |
tttgcctatgaattaccttggaccaaacatttgtgatctggctttattttcgattcaacctttgtttggctttattttctgcgtttatctcatcgattca |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14730608 |
tttgcctatgaattaccttggaccaaacatttgtgatctgtctttattttcgattcaacctttgtttggctttattttctgcgtttatctcatcgattca |
14730509 |
T |
|
| Q |
585 |
tctca |
589 |
Q |
| |
|
||||| |
|
|
| T |
14730508 |
tctca |
14730504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 14731000 - 14730907
Alignment:
| Q |
3 |
tttttgttattaggttgaaggttatacacatcagcaatcacaatagtttttggtacaactcagttttctttcagttgcactaaactagtgccaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14731000 |
tttttgttattaggttgaaggttatacacatcagcaatcacaatagtttttggtacaactcagttttctttcagttgcactaaactagtgccaa |
14730907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 537 - 581
Target Start/End: Complemental strand, 14730312 - 14730268
Alignment:
| Q |
537 |
attcaacctttgtttggctttattttctgcgtttatctcatcgat |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14730312 |
attcaacctttgtttggctttattttctgcgtttatctcatcgat |
14730268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 538 - 581
Target Start/End: Original strand, 17593176 - 17593219
Alignment:
| Q |
538 |
ttcaacctttgtttggctttattttctgcgtttatctcatcgat |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17593176 |
ttcaacctttgtttggctttattttctgcgtttatctcatcgat |
17593219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University