View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_10 (Length: 569)
Name: NF10121_low_10
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 54074995 - 54075555
Alignment:
| Q |
1 |
cggaaaatattttcgcaacctatgttggtaaccggaacgtcggaaaatgaatttcaaaatcattctccggcgacggagcttgtgaggtggaattttgttg |
100 |
Q |
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| T |
54074995 |
cggaaaatattttcgcaacctatgttggtaaccggaacgtcggaaaatgaatttcaaaatcattctccggcggcggagcttgtgaggtggaattttgttg |
54075094 |
T |
|
| Q |
101 |
tttacgagtctttttcaatggaagacgacgtcgttttgtttgccaaaggggtgaatcatcgtcaaggctacgacaggccggcgaaggagcttaactgtgt |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075095 |
tttacgagtctttttcaatggaagacgacgtagttttgtttgccaaaggtgttaatcatcgtcaaggctacgacaggccggcgaaggagcttaactgtgt |
54075194 |
T |
|
| Q |
201 |
tttccaaataggagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattcc |
300 |
Q |
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| T |
54075195 |
tttccaaataggagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattcc |
54075294 |
T |
|
| Q |
301 |
aaaattggtgtttccctcgagattattggagaaaacatcgtggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtgg |
400 |
Q |
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| T |
54075295 |
gaaattggagtttccctcgagattattggagaaaacatcgtggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtgg |
54075394 |
T |
|
| Q |
401 |
ctgttcaaaagtttgggcctccggcccagcccaaatatttcctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgta |
500 |
Q |
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| T |
54075395 |
cagttcaaaactttgggcctccggcccagcccaaatatttcctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgta |
54075494 |
T |
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| Q |
501 |
tcattcaaaagtgggagtggaaaatttcatattgtatgataatggaagcgatgatgatgat |
561 |
Q |
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| T |
54075495 |
tcattcaaaagtgggagtggaaaatttcatattgtatgataatggaagcgatgatgatgat |
54075555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 3229482 - 3229393
Alignment:
| Q |
76 |
gagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaagacgacgtcgttttgtttgccaaaggggtgaatcatcgtcaa |
165 |
Q |
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| T |
3229482 |
gagcttgtgaggtggaattttgttgtttacgagtctttttcaatggaggacgacgtcgttttgtttgccaaaggtgtgaatcatcgtcaa |
3229393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 48529259 - 48529190
Alignment:
| Q |
212 |
gagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtc |
281 |
Q |
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| T |
48529259 |
gagacggaatttgcaccgccgttacaagctccattcaagaggttttcccatgcctccatccagatccgtc |
48529190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 34849736 - 34849783
Alignment:
| Q |
212 |
gagacggaattcgcaccgccgttacaagctctgttcaagaggttttcc |
259 |
Q |
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| T |
34849736 |
gagacgtaattcgcaccgccgttacaagctccgttcaagaggttttcc |
34849783 |
T |
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