View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_100 (Length: 227)
Name: NF10121_low_100
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_100 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30275142 - 30274916
Alignment:
| Q |
1 |
tttgataccatccattccccctgatatgcaagctgtcttgaagcgatgtgaagaccttgagaaggaagttcgatcattaaagcttaatttatccttcatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30275142 |
tttgataccatccattccccctgatatgcaagctgtcttgaagcgatgtgaagaccttgagaaggaagttcgatcgttaaagcttaatttatccttcatg |
30275043 |
T |
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| Q |
101 |
aacaggaaagattctgaacaaacaaagcagatagaggaccttcataagcaaaatgaggatttgactgatgaaaaagaacaccttctggaagagattgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275042 |
aacaggaaagattctgaacaaacaaagcagatagaggaccttcataagcaaaatgaggatttgactgatgaaaaagaacaccttctggaagagattgaaa |
30274943 |
T |
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| Q |
201 |
cattagtatcaaaaaatggaaaactct |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
30274942 |
cattagtatcaaaaaatggaaaactct |
30274916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 11097498 - 11097599
Alignment:
| Q |
1 |
tttgataccatccattccccctgatatgcaagctgtcttgaagcgatgtgaagaccttgagaaggaagttcgatcattaaagcttaatttatccttcatg |
100 |
Q |
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||||| |||| | |||||| | |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
11097498 |
tttgacaccaacaattccctcagatatgcaagctatcttgaagcgatgcgaaaaccttgagaaggaagttcgatcactaaagcttaatttgtccttcatg |
11097597 |
T |
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| Q |
101 |
aa |
102 |
Q |
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|| |
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| T |
11097598 |
aa |
11097599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 11097694 - 11097791
Alignment:
| Q |
103 |
caggaaagattctgaacaaacaaagcagatagaggaccttcataagcaaaatgaggatttgactgatgaaaaagaacaccttctggaagagattgaaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| | ||| || ||||||||||||| |
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| T |
11097694 |
caggaaggattctgaacaaacaaagcagatagaggaccttcagaagcagaatgaagacttggcggatgaaaaagagcgcctcctcgaagagattgaaa |
11097791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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