View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_101 (Length: 227)
Name: NF10121_low_101
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_101 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 3392373 - 3392173
Alignment:
| Q |
27 |
ctcagtcataataacacagtccttgagtgtcggctagaagcaccgatgtcaaaataggagaagactcattaaccataatcaaagagtttaaacaactgac |
126 |
Q |
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| T |
3392373 |
ctcagtcataataacacagtccttgagtgtcggctagaagcaccgatgtcaaaataggagaagactcattaaccataatcaaagagtttaaacaactaac |
3392274 |
T |
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| Q |
127 |
tctcatctttgcaatgatataaacacaagcattcccttcacaaagagtgtgcttcaaaaagaaatttcaatctttatccatgaaatctctaataatctcc |
226 |
Q |
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| T |
3392273 |
tctcatctttgcaatgatataaacacaagcattcccttcacaaagagtgtgcttcaaaaagaaatttcaatctttattcatgaaatctctaataatctcc |
3392174 |
T |
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| Q |
227 |
a |
227 |
Q |
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| T |
3392173 |
a |
3392173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 33201019 - 33200919
Alignment:
| Q |
127 |
tctcatctttgcaatgatataaacacaagcattcccttcacaaagagtgtgcttcaaaaagaaatttcaatctttatccatgaaatctctaataatctcc |
226 |
Q |
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|||||||||||||| ||||| ||| ||||||| ||||||| ||||| || ||||||| ||||||||||| || | |||| ||||| | ||||||||| |
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| T |
33201019 |
tctcatctttgcaaggatattcacataagcatttccttcacgaagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatctttgataatctcc |
33200920 |
T |
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| Q |
227 |
a |
227 |
Q |
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| T |
33200919 |
a |
33200919 |
T |
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