View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_103 (Length: 221)

Name: NF10121_low_103
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_103
NF10121_low_103
[»] scaffold0284 (1 HSPs)
scaffold0284 (15-206)||(2254-2445)
[»] chr4 (7 HSPs)
chr4 (13-218)||(6553013-6553219)
chr4 (13-218)||(6552613-6552819)
chr4 (13-218)||(312787-313003)
chr4 (16-83)||(38932846-38932914)
chr4 (111-177)||(24181727-24181793)
chr4 (19-81)||(48828123-48828185)
chr4 (88-140)||(6561023-6561075)
[»] chr8 (3 HSPs)
chr8 (13-193)||(41528440-41528620)
chr8 (13-206)||(36754454-36754647)
chr8 (111-169)||(43216917-43216975)
[»] scaffold0114 (1 HSPs)
scaffold0114 (13-218)||(35117-35323)
[»] chr1 (7 HSPs)
chr1 (13-218)||(45919624-45919830)
chr1 (13-218)||(49880255-49880463)
chr1 (20-89)||(40872549-40872618)
chr1 (97-177)||(16853665-16853745)
chr1 (88-169)||(31088746-31088829)
chr1 (16-57)||(9890556-9890597)
chr1 (22-54)||(51849590-51849622)
[»] chr2 (7 HSPs)
chr2 (13-206)||(31967255-31967448)
chr2 (16-81)||(23077824-23077889)
chr2 (14-86)||(9470617-9470689)
chr2 (13-81)||(41746338-41746406)
chr2 (90-129)||(36727631-36727670)
chr2 (103-143)||(36720129-36720169)
chr2 (93-177)||(45054025-45054109)
[»] chr5 (2 HSPs)
chr5 (13-204)||(9023444-9023635)
chr5 (18-54)||(27769810-27769846)
[»] scaffold0211 (1 HSPs)
scaffold0211 (13-218)||(19858-20064)
[»] chr3 (6 HSPs)
chr3 (36-203)||(50239968-50240138)
chr3 (13-87)||(7672541-7672615)
chr3 (8-74)||(43838652-43838718)
chr3 (13-54)||(30006165-30006206)
chr3 (111-178)||(14249223-14249290)
chr3 (111-177)||(6437626-6437692)
[»] chr6 (6 HSPs)
chr6 (16-89)||(6525049-6525122)
chr6 (13-79)||(21237365-21237431)
chr6 (22-53)||(12291667-12291698)
chr6 (98-177)||(18089942-18090021)
chr6 (96-177)||(26595897-26595978)
chr6 (88-176)||(31737166-31737254)
[»] scaffold0191 (1 HSPs)
scaffold0191 (111-177)||(11645-11711)
[»] scaffold0216 (1 HSPs)
scaffold0216 (88-140)||(29157-29209)
[»] scaffold0074 (1 HSPs)
scaffold0074 (90-177)||(32751-32837)
[»] chr7 (4 HSPs)
chr7 (26-88)||(5198098-5198160)
chr7 (17-81)||(30839724-30839788)
chr7 (90-144)||(2929478-2929532)
chr7 (111-177)||(6190585-6190651)
[»] scaffold0252 (1 HSPs)
scaffold0252 (16-81)||(17102-17166)


Alignment Details
Target: scaffold0284 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 2445 - 2254
Alignment:
Q  15 gagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaac 114  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2445 gagacaatttaaaattttaatagattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaac 2346  T
Q  115 atataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  2345 atataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 2254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 6553013 - 6553219
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  6553013 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctagatgcaaaagtaaatgttaagaa 6553112  T
Q  113 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| ||||     
T  6553113 acatataagtgagatgatcgatatacctaatagactaagattttggatgatggtgtgctgtcaattgtatgattaaccttaacataatgtgatgatccaa 6553212  T
Q  212 ctcattg 218  Q
    |||||||    
T  6553213 ctcattg 6553219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 6552613 - 6552819
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  6552613 cagagacaatttaaatctttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaaaaa 6552712  T
Q  113 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||||     
T  6552713 acgtataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaa 6552812  T
Q  212 ctcattg 218  Q
    |||||||    
T  6552813 ctcattg 6552819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 312787 - 313003
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccc----------tggatgcaaaagtaa 102  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |          |||||||||||||||    
T  312787 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctcgatctgtctcgatctgtctgtggatgcaaaagtaa 312886  T
Q  103 atgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  312887 atgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgt 312986  T
Q  203 gatg-tccatctcattg 218  Q
    |||| |||| |||||||    
T  312987 gatgatccaactcattg 313003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 38932846 - 38932914
Alignment:
Q  16 agacaatttaaaattttaataca-ttgagggactattttagcctcacatgcatccaatgtctagatctg 83  Q
    ||||||||||||||||| ||||| ||||| |||||||||| || || ||||||| |||||||| |||||    
T  38932846 agacaatttaaaattttgatacatttgagagactattttaaccccatatgcatcaaatgtctaaatctg 38932914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 24181793 - 24181727
Alignment:
Q  111 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 177  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||| ||||||| || |||||||    
T  24181793 aaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatatggtgtcaat 24181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 48828123 - 48828185
Alignment:
Q  19 caatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 81  Q
    ||||| |||||||  |||||||||||| ||||||||||| |||||  ||| ||||||||||||    
T  48828123 caattgaaaatttcgatacattgagggtctattttagccccacatatatcaaatgtctagatc 48828185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 6561023 - 6561075
Alignment:
Q  88 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 140  Q
    ||||| |||||||| |||||||  |||||||||||||||||| | ||||||||    
T  6561023 tggatacaaaagtagatgttaaacaacatataagtgagatgaccaatatacct 6561075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 41528620 - 41528440
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  41528620 cagagacaatttaaaattttaatacattgatgtactattttagcctcacatgtatccaatgtctagatatgtccctggatgcaaaagtaaatgttaagaa 41528521  T
Q  113 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaacctta 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528520 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaacctta 41528440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 36754647 - 36754454
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  36754647 cagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatctatccctggatgcaaaagtaaatgttaagaa 36754548  T
Q  113 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||  |||||||||||    
T  36754547 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatctgctgtcaatagtatgattaaccttaacataatgtgatg 36754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 43216975 - 43216917
Alignment:
Q  111 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 169  Q
    ||||||||||||||||||||| |||||| |||| |  ||||||||||| ||||||||||    
T  43216975 aaacatataagtgagatgatcaatatacataatgctttaagattttgggtgatgatgtg 43216917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 35117 - 35323
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  35117 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaa 35216  T
Q  113 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 211  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| |||||| ||||     
T  35217 acatataagttagatgatcgatatacctaatacactaagattttggatgatgttgtgctgtcaattgtatgattaaccttaacataaagtgatgatccaa 35316  T
Q  212 ctcattg 218  Q
    |||||||    
T  35317 ctcattg 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 45919830 - 45919624
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  45919830 cagagacaatttaaaattttaatacattggtggactattttagtctcacatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaa 45919731  T
Q  113 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 211  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||||     
T  45919730 atatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaa 45919631  T
Q  212 ctcattg 218  Q
    |||||||    
T  45919630 ctcattg 45919624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 49880255 - 49880463
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    ||||||||||||||||||| |||||||||  |||||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  49880255 cagagacaatttaaaatttaaatacattggtggactattttagtctcgcatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaa 49880354  T
Q  113 acatataagtgagatgat--cgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tcc 209  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||  ||||||||||| |||    
T  49880355 acatataagtgagatgataaagatatacctaatacactaagattttgattgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatcc 49880454  T
Q  210 atctcattg 218  Q
    | |||||||    
T  49880455 aactcattg 49880463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 40872618 - 40872549
Alignment:
Q  20 aatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctg 89  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||  ||| |||||||| || ||||||||    
T  40872618 aatttaaaattttgatacattaagggactattttagcctcacatatatcaaatgtctaaatttgtccctg 40872549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 16853665 - 16853745
Alignment:
Q  97 aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 177  Q
    |||||||| || | ||||||||||||||||||||| |||||| |||| |  |||| |||||| |||||||||| |||||||    
T  16853665 aagtaaatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgtcaat 16853745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 31088829 - 31088746
Alignment:
Q  88 tggatgcaaaagtaaatgttaagaaacatata--agtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 169  Q
    ||||||||| ||||  |||| |||||||||||  |||||||||||| ||||||||||| |  ||| ||||||||||||| ||||    
T  31088829 tggatgcaagagtaggtgttgagaaacatatataagtgagatgatcaatatacctaatgccttaatattttggatgatggtgtg 31088746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 9890597 - 9890556
Alignment:
Q  16 agacaatttaaaattttaatacattgagggactattttagcc 57  Q
    |||||||||||||||||||||||||||  ||| |||||||||    
T  9890597 agacaatttaaaattttaatacattgaaagaccattttagcc 9890556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 51849590 - 51849622
Alignment:
Q  22 tttaaaattttaatacattgagggactatttta 54  Q
    ||||||||||||||||||| |||||||||||||    
T  51849590 tttaaaattttaatacattcagggactatttta 51849622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 31967448 - 31967255
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    ||||||||| ||||| |||| ||| ||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  31967448 cagagacaacttaaattttttataaattgatggactactttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaa 31967349  T
Q  113 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  31967348 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 31967255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 23077889 - 23077824
Alignment:
Q  16 agacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 81  Q
    |||||| |||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||    
T  23077889 agacaacttaaaattttgatacattgaggaactattttagccccacatgtatccgatgtctagatc 23077824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 9470689 - 9470617
Alignment:
Q  14 agagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtcc 86  Q
    ||||||||||||||||||| ||| ||| || |||||||||| || |||||| ||| |||||||||||| ||||    
T  9470689 agagacaatttaaaattttgatatatttagtgactattttaaccccacatgtatcaaatgtctagatccgtcc 9470617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 41746406 - 41746338
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 81  Q
    |||||||||||||||||||| ||| ||| |||| ||||||||||| |||||  ||| ||||||||||||    
T  41746406 cagagacaatttaaaattttgatatattaagggtctattttagccccacatatatcaaatgtctagatc 41746338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 36727670 - 36727631
Alignment:
Q  90 gatgcaaaagtaaatgttaagaaacatataagtgagatga 129  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  36727670 gatgcaaaagtagatgttaagaaacatatatgtgagatga 36727631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 36720129 - 36720169
Alignment:
Q  103 atgttaagaaacatataagtgagatgatcgatatacctaat 143  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  36720129 atgttgagcaacatataagtgagatgatccatatacctaat 36720169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 45054109 - 45054025
Alignment:
Q  93 gcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 177  Q
    |||||||||||| || || ||||||||||||||||  || |||||||| ||    |||||||||| |||| |||||| |||||||    
T  45054109 gcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtcttaagattttgaatgaagatgtggtgtcaat 45054025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 9023444 - 9023635
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||    
T  9023444 cagagacaatttaaaattttaatacattgatagactatcttagcctcacatgtatccaatgtctatatttgtccctggatgcaaaagtaaatgttaagaa 9023543  T
Q  113 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtga 204  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  9023544 acatacaagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtga 9023635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 27769846 - 27769810
Alignment:
Q  18 acaatttaaaattttaatacattgagggactatttta 54  Q
    |||||||||| |||| |||||||||||||||||||||    
T  27769846 acaatttaaattttttatacattgagggactatttta 27769810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 20064 - 19858
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 112  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  20064 cagagacaatttaaaattttaatacattgatggactatcttaacctcacatgtatccaatgtctagatttgtccctgaatgcaaaagtaaatgttaagaa 19965  T
Q  113 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||  ||||||||||| ||||     
T  19964 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgccaattgtattattaaccataacataatgtgatgatccaa 19865  T
Q  212 ctcattg 218  Q
    |||||||    
T  19864 ctcattg 19858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 36 - 203
Target Start/End: Original strand, 50239968 - 50240138
Alignment:
Q  36 acattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa---gaaacatataagtgagatgatcg 132  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||    
T  50239968 acattgatggactattttagcctcacatgtagccaatgtctagatctgtccctcgatgcaaaagtaaatgttaattagaaacatataagtgagatgatcg 50240067  T
Q  133 atatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  50240068 atatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtg 50240138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 7672541 - 7672615
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccc 87  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||  ||||| ||| ||| |||||||| |||||    
T  7672541 cagagacaatttaaaattttaatacattgatgaactattttaaccatacatgtatcaaatatctagatccgtccc 7672615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 43838652 - 43838718
Alignment:
Q  8 agaagcagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgt 74  Q
    |||| |||||||||| ||||||||| ||||||||||| |||||||||||| |||||| ||| |||||    
T  43838652 agaatcagagacaatgtaaaattttgatacattgaggaactattttagccccacatgtatcaaatgt 43838718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 30006206 - 30006165
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactatttta 54  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  30006206 cagagataatttaaaattttaatacattgtgggactatttta 30006165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 14249290 - 14249223
Alignment:
Q  111 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaatt 178  Q
    ||||||||||||||||||| | |||||| ||||||  |||| |||||| |||||||||| | ||||||    
T  14249290 aaacatataagtgagatgaccaatatacataatactttaaggttttgggtgatgatgtggtatcaatt 14249223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 6437626 - 6437692
Alignment:
Q  111 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 177  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||  |||||||||| |||||||    
T  6437626 aaacatataagtgagatgatcaatatacataatgctttaaggttttgagtgatgatgtggtgtcaat 6437692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 6525049 - 6525122
Alignment:
Q  16 agacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctg 89  Q
    ||||||||||||||||| ||||||||| |||||||||||| | |||||| ||| |||||||||||||| |||||    
T  6525049 agacaatttaaaattttgatacattgatggactattttagtcccacatgtatcaaatgtctagatctgcccctg 6525122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 21237365 - 21237431
Alignment:
Q  13 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctaga 79  Q
    |||||||||||||||||||| |||||||  |||||||||||| || |||||| ||  ||||||||||    
T  21237365 cagagacaatttaaaattttgatacattatgggactattttaaccccacatgtatgaaatgtctaga 21237431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 12291667 - 12291698
Alignment:
Q  22 tttaaaattttaatacattgagggactatttt 53  Q
    ||||||||||||||||||||||||||||||||    
T  12291667 tttaaaattttaatacattgagggactatttt 12291698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 18090021 - 18089942
Alignment:
Q  98 agtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 177  Q
    |||| ||||| |||||||||||| |||||||| | ||||||||||| |  |||| |||||| ||| |||||| |||||||    
T  18090021 agtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaat 18089942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 26595978 - 26595897
Alignment:
Q  96 aaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 177  Q
    |||||| ||||| |||||||||||||| |||||| | ||  |||||||    |||| ||||||||||||||||| |||||||    
T  26595978 aaagtagatgtttagaaacatataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaat 26595897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 31737254 - 31737166
Alignment:
Q  88 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaa 176  Q
    ||||||||| |||| ||||| |  |||||| |||||| |||||  |||||||||||||| |||||||| |  ||| |||||| ||||||    
T  31737254 tggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacctaatacattaagatttagtgtgaagatgtggtgtcaa 31737166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 11645 - 11711
Alignment:
Q  111 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 177  Q
    ||||||||||||||||||||| |||||| ||||||  |||| |||||| |||||||||| |||||||    
T  11645 aaacatataagtgagatgatcaatatacataatactttaaggttttgggtgatgatgtggtgtcaat 11711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  88 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 140  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||    
T  29209 tggatgcaaaagtagatgttaaacaacatataagtgagatgatcaatatacct 29157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 32751 - 32837
Alignment:
Q  90 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 177  Q
    ||||||| || | |||||||||||||||||||||||||||  ||||||||| || |  ||| ||||| |||||||||||| |||||||    
T  32751 gatgcaagagcatatgttaagaaacatataagtgagatgactgatatacctgatgcgttaaaatttt-gatgatgatgtggtgtcaat 32837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 5198098 - 5198160
Alignment:
Q  26 aaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccct 88  Q
    ||||||| |||||||||| ||||||||||||  || ||||||| |||||||||||||| ||||    
T  5198098 aaattttgatacattgagagactattttagctccatatgcatcaaatgtctagatctgcccct 5198160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 30839788 - 30839724
Alignment:
Q  17 gacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 81  Q
    ||||||| |||||| | ||||||| |||||||||||||||| || ||| ||| ||||||||||||    
T  30839788 gacaattaaaaattctgatacattaagggactattttagccccaaatgtatcaaatgtctagatc 30839724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 2929478 - 2929532
Alignment:
Q  90 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaata 144  Q
    |||| ||||||| ||||||||||||||||| ||||||||| | | ||||||||||    
T  2929478 gatgtaaaagtagatgttaagaaacatatatgtgagatgaccaagatacctaata 2929532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 6190585 - 6190651
Alignment:
Q  111 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 177  Q
    ||||||||||||| ||| ||| |||||| |||| |  ||||||||||| |||||||||| |||||||    
T  6190585 aaacatataagtgggattatcaatatacataatgctttaagattttgggtgatgatgtggtgtcaat 6190651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 17166 - 17102
Alignment:
Q  16 agacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 81  Q
    ||||||||||||||||| |||||||||  ||||||||| ||| |||||| ||| ||||||||||||    
T  17166 agacaatttaaaattttgatacattgaaagactatttt-gccccacatgtatcaaatgtctagatc 17102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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