View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_104 (Length: 220)
Name: NF10121_low_104
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_104 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 42394311 - 42394512
Alignment:
| Q |
1 |
tactctaccattttccgaacctcaccacggcggagttcgtagactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatcc |
100 |
Q |
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| T |
42394311 |
tactctaccattttccgaacctcaccacggcggagttcgtagactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatcc |
42394410 |
T |
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| Q |
101 |
gccactgtggtccgtacgggctccatgatatatctgagccaccgtatgtagctgcttttccggcggcagggggatcacggttggcgaaaacggtgtcata |
200 |
Q |
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| T |
42394411 |
gccactgtggtccgtacgggctccatgatatatctgagccaccatatgtagctgcttttccggcggcagggggatcacggttggcgaaaatggtgtcgta |
42394510 |
T |
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| Q |
201 |
gt |
202 |
Q |
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|| |
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| T |
42394511 |
gt |
42394512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 42378406 - 42378592
Alignment:
| Q |
11 |
ttttccgaacctcaccacggcggagttcgtagactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatccgccactgtgg |
110 |
Q |
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|||||||||||||||| || ||||| ||||| || || |||||| || | || |||||||||||||| ||||| | ||| |||||||| ||||||||||| |
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| T |
42378406 |
ttttccgaacctcacctcgtcggagctcgtaaacggagtcaagagttgtgttactaagcatcttcacgacacagatttttctcagcatacgccactgtgg |
42378505 |
T |
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| Q |
111 |
tccgtacgggctccatgatatatctgagccaccgtatgtagctgcttttccggcggcagggggatcacggttggcgaaaacggtgtc |
197 |
Q |
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| T |
42378506 |
accgtagggggtccatactatatcgttgccgccgtaagtggcggctctaccggcggcagggacgtcacggttggcgaaaactgtgtc |
42378592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 224 - 402
Alignment:
| Q |
24 |
accacggcggagttcgtagactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatccgccactgtggtccgtacgggctc |
123 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
224 |
accacggcggagttcatacactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatccaccactgtggtccgtacgggctc |
323 |
T |
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| Q |
124 |
catgatatatctgagccaccgtatgtagctgcttttccggcggcagggggatcacggttggcgaaaacggtgtcatagt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |
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| T |
324 |
catgatatatctgagccaccgtatgtagctgcttttccggcagcagggggatcacggttggtgaaaacggtgtcgtagt |
402 |
T |
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