View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_106 (Length: 218)

Name: NF10121_low_106
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_106
NF10121_low_106
[»] chr4 (11 HSPs)
chr4 (1-197)||(23453268-23453465)
chr4 (1-91)||(23868917-23869007)
chr4 (1-97)||(24307408-24307504)
chr4 (1-94)||(23886012-23886105)
chr4 (1-95)||(23415708-23415802)
chr4 (1-93)||(23402259-23402351)
chr4 (6-90)||(23408544-23408628)
chr4 (6-95)||(26434214-26434303)
chr4 (6-95)||(26832925-26833014)
chr4 (6-97)||(26435994-26436085)
chr4 (12-91)||(34662044-34662123)
[»] chr7 (2 HSPs)
chr7 (6-95)||(47317472-47317561)
chr7 (15-55)||(40180309-40180349)
[»] chr1 (3 HSPs)
chr1 (1-95)||(33216630-33216724)
chr1 (12-97)||(45576399-45576484)
chr1 (15-67)||(29391665-29391717)
[»] chr2 (1 HSPs)
chr2 (1-52)||(14715434-14715485)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 23453465 - 23453268
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgagagaa 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||||||    
T  23453465 ctgcagtcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttagatctgagagaa 23453366  T
Q  101 aatcggtggcctttgttgtgctcaagaatcgttagata-ttttaatttgtagtttgttatttgcnnnnnnnaaagttgtaatgaactaataggatggg 197  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  23453365 aatcggtggcctttgttgtgctcaagaatcgttagatatttttaatttgtagtttgttatttgctttttttaaagttgtaatgaactaataggatggg 23453268  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 23868917 - 23869007
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 91  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868917 ctgctgtcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 23869007  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24307408 - 24307504
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgaga 97  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||    
T  24307408 ctgctgtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagatttgaga 24307504  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 23886012 - 23886105
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttg 94  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  23886012 ctgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 23886105  T

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Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 23415802 - 23415708
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| ||||| ||||||| ||||    
T  23415802 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagacttga 23415708  T

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Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 23402259 - 23402351
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagattt 93  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| ||||||||||||||||    
T  23402259 ctgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttagattt 23402351  T

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Target: chr4; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 23408628 - 23408544
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 90  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| ||||| |||||||    
T  23408628 gtcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttaga 23408544  T

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Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 26434214 - 26434303
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 95  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| ||||||||||||||||||    
T  26434214 gtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga 26434303  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 26832925 - 26833014
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 95  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| ||||||||||||||||||    
T  26832925 gtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga 26833014  T

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Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 26435994 - 26436085
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgaga 97  Q
    ||||| |||||||| || ||||||||||||||||||| ||||||||| || || || ||||| |||||||| || |||||||||||||||||    
T  26435994 gtcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagatttgaga 26436085  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 34662123 - 34662044
Alignment:
Q  12 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 91  Q
    |||||||||||||| |||||||| ||||||||||| ||||| || || |||||||| || ||||| || |||||||||||    
T  34662123 cttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttagat 34662044  T

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Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 47317472 - 47317561
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 95  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||| || || ||||||||||| ||||| ||||||||||| ||||||    
T  47317472 gtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttactagttcttaaatttga 47317561  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 40180349 - 40180309
Alignment:
Q  15 gttcttcctggtgaattggccaagcatgctgtttctgaagg 55  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  40180349 gttcttcctggagaattggctaaacatgctgtttctgaagg 40180309  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33216630 - 33216724
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 95  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||| || || || |||||||| ||||| ||| ||||||| ||||||    
T  33216630 ctgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggctgtgaccaagtttactggttcttaaatttga 33216724  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 45576399 - 45576484
Alignment:
Q  12 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgaga 97  Q
    |||||||| || | ||||||||| ||||||| ||||||||| || || ||||||||||| || ||||| || ||||||||||||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagatttgaga 45576484  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 29391665 - 29391717
Alignment:
Q  15 gttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgt 67  Q
    |||||||| ||||||||||| || ||||||||||| |||||||| || |||||    
T  29391665 gttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14715434 - 14715485
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga 52  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||| |||||    
T  14715434 ctgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga 14715485  T

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