View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_107 (Length: 216)
Name: NF10121_low_107
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_107 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 40724570 - 40724382
Alignment:
| Q |
18 |
ttatcgtcctgtcagaaaaggagatctatttcttgtgcggggagggatgagaagtgtagaatttaaggtcaatgaaactgatcctggggagttctgtgtg |
117 |
Q |
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| T |
40724570 |
ttattgtccggtcagaaaaggagatctatttcttgtgcggggagggatgagaagtgtagaatttaaggtcaatgaaactgatcctggggagttctgtgcg |
40724471 |
T |
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| Q |
118 |
gttgctccagacactgaggtcttctgcgaggcggaacccgtgaaaagagaggatgaagaaaggcttgatgaagtcggttatgatgatgt |
206 |
Q |
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| T |
40724470 |
gttgctccagacactgaggtcttctgcgagggggaacccgtgaaaagagaggatgaagaaaggcttgatgaagtcggttatgatgatgt |
40724382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 40665484 - 40665672
Alignment:
| Q |
18 |
ttatcgtcctgtcagaaaaggagatctatttcttgtgcggggagggatgagaagtgtagaatttaaggtcaatgaaactgatcctggggagttctgtgtg |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||| | |
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| T |
40665484 |
ttatcgtcccgtcagaaaaggagatctatttcttgtgcggggagggatgagaagtgtagagtttaaggtcattgaaactgatcctggtgagtactgtacg |
40665583 |
T |
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| Q |
118 |
gttgctccagacactgaggtcttctgcgaggcggaacccgtgaaaagagaggatgaagaaaggcttgatgaagtcggttatgatgatgt |
206 |
Q |
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| T |
40665584 |
gttgctccagacactgagatcttctgtgagggggaacctgtgaaaagagatgatgaagaaagacttgatgaagttggttatgatgatgt |
40665672 |
T |
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