View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10121_low_109 (Length: 203)
Name: NF10121_low_109
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_109 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 13945130 - 13945313
Alignment:
| Q |
5 |
gaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgttcaacgaagcaatgctagca |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13945130 |
gaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgttcaacgaagcaatgctagca |
13945229 |
T |
|
| Q |
105 |
aaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgatgtc |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13945230 |
aaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgatgtc |
13945313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 14086319 - 14086502
Alignment:
| Q |
5 |
gaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgttcaacgaagcaatgctagca |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14086319 |
gaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgttcaacgaagcaatgctagca |
14086418 |
T |
|
| Q |
105 |
aaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgatgtc |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14086419 |
aaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgatgtc |
14086502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University