View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_12 (Length: 548)
Name: NF10121_low_12
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 43107367 - 43107896
Alignment:
| Q |
1 |
acagaattcagaaaaatagaataaaactcaagtagttaaggagaatgagtcttcttgtagtaattgtttgaagttttctgtgacttggtctttgttggtt |
100 |
Q |
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| T |
43107367 |
acagaattcagaaaaattgaataaaactcaagtggttaaggagaatgagtcttcttgtagtaattgtttgaagttttctgtgacttggtctttgttggtt |
43107466 |
T |
|
| Q |
101 |
agtgggtttattcagtctttgccaattccttttaaatctgtgaagaagagagctcagaaagtgtgtgatgaagatagtcataaggagaagtgttcatgca |
200 |
Q |
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| T |
43107467 |
agtgggtttattcagtctttgccaattccttttaaatctgtgaagaagagaggtcagaaagtgtgtgatgaagatagtcataaggagaagtgttcatgca |
43107566 |
T |
|
| Q |
201 |
tgaaaccaagtttatcaccatgtgaaatgaagcataaggagtcaaagggtagaacaattaaggaaaaagttgtgaagaggaaagatggaagagaacatgt |
300 |
Q |
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| T |
43107567 |
tgaaaccaagtttatcaccatgtgaaatgaagcataatgagtcaaagggtagaacaattaaggaaaaagttgtgaagaggaaagatggaaaagaacatgt |
43107666 |
T |
|
| Q |
301 |
gtcacttgaatgtgttataggttttatctttgatcagttatctcatacacttcagagtcttgatcaaggaatcaatggattgcaagagaaaaatgatgaa |
400 |
Q |
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| T |
43107667 |
ttcacttgaatgtgttataggttttatctttgatcagttatctcatacacttcagagtcttgatcaaggaatcaatggattgcaagagaaaaatgatgaa |
43107766 |
T |
|
| Q |
401 |
cttgagtgtgggaaggcttcattggattcagctccttttggtcatgtgaatgcattcactagcttcttggaagggcataaagtggatgtgaatggtttct |
500 |
Q |
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| T |
43107767 |
cttgagtgtgggaaggcttcattggattcagctccttttggtcatgtgaatgcattcactagcttcttggaagggcataaagtggatgtgaatggtttct |
43107866 |
T |
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| Q |
501 |
tggggaatttgaattttgcaaaggtgggtg |
530 |
Q |
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| T |
43107867 |
tggggaatttgaattttgcaaaggtgggtg |
43107896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 835742 - 835645
Alignment:
| Q |
5 |
aattcagaaaaatagaataaaactcaagtagttaaggagaatgagtcttcttgt-----agtaattgtttgaagttttctgtgacttggtctttgttg |
97 |
Q |
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|||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| |||| |
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| T |
835742 |
aattcagaaaaaataaataaaactcaatcggttaaggagaatgggtcttcttgtcttgtagtaattgtttgaagttttcagtgacttggtcttcgttg |
835645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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