View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_14 (Length: 537)

Name: NF10121_low_14
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_14
NF10121_low_14
[»] chr2 (8 HSPs)
chr2 (155-530)||(5794402-5794777)
chr2 (274-527)||(5780896-5781149)
chr2 (159-295)||(5825812-5825945)
chr2 (18-160)||(5827140-5827291)
chr2 (18-107)||(5794793-5794883)
chr2 (182-295)||(5781253-5781363)
chr2 (161-258)||(5767726-5767823)
chr2 (166-258)||(5830614-5830706)
[»] scaffold0159 (2 HSPs)
scaffold0159 (274-527)||(26228-26481)
scaffold0159 (182-295)||(26585-26695)
[»] chr6 (2 HSPs)
chr6 (166-258)||(29328141-29328233)
chr6 (93-160)||(29327208-29327275)
[»] chr4 (2 HSPs)
chr4 (173-258)||(51158596-51158681)
chr4 (173-249)||(51147450-51147526)


Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 155 - 530
Target Start/End: Complemental strand, 5794777 - 5794402
Alignment:
Q  155 tgcattttctggtacatatccatcaccttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctctt 254  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5794777 tgcattttctggtacatatccatcaccttttgttcagcactaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctctt 5794678  T
Q  255 catatatacatcacctattaaaaacaaaatactcttgttaactaagtttgtcccaactcgagagaattgccaacagaaaaaagattatgaagtattagtt 354  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5794677 catatatacatcacctattaaaaacaaaatactcttgttaaccaagtttgtcccaactcgagagaattgccaacagaaaaaagattatgaagtattagtt 5794578  T
Q  355 tgaactcagtagaagccgaatcttccattacctatccgtccatatgaaccctcactcagacaaattcatcaaattgagcgatgcttgattcgtaatcagc 454  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5794577 tgaactcagtagaagccgaatcttccattacctatccatccatatgaaccctcactcagacaaattcatcaaattgagcgatgcttgattcgtaatcagc 5794478  T
Q  455 aagtcttagaaatgttatgaacaatacgctctcctgagcctgtctaattttgataaggacagataaattcttctct 530  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  5794477 aagtcttagaaatgttatgaacaatacgctctcccgagcctgtctaattttcataaggacagataaattcttctct 5794402  T

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Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 274 - 527
Target Start/End: Complemental strand, 5781149 - 5780896
Alignment:
Q  274 aaaaacaaaatactcttgttaactaagtttgtcccaactcgagagaattgccaacagaaaaaagattatgaagtattagtttgaactcagtagaagccga 373  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  5781149 aaaaacaaaatactcttgttaaccaagtttgtcccaactcgagagaattgccaacagaaaaaagattatgaagtatgagtttcaactcagtagaagccga 5781050  T
Q  374 atcttccattacctatccgtccatatgaaccctcactcagacaaattcatcaaattgagcgatgcttgattcgtaatcagcaagtcttagaaatgttatg 473  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5781049 atcttctattacctatccatccatatgaaccctcactcagccaaattcatcaaattgagcgatgcttgattcgtaatcagcaagtcttaaaaatgttatg 5780950  T
Q  474 aacaatacgctctcctgagcctgtctaattttgataaggacagataaattcttc 527  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5780949 aacaatacgctctcccgagcctgtctaattttgataaggacagataaattcttc 5780896  T

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Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 159 - 295
Target Start/End: Complemental strand, 5825945 - 5825812
Alignment:
Q  159 ttttctggtacatatccatcaccttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttcata 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  5825945 ttttctggtacatatccatcaccttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttc--- 5825849  T
Q  259 tatacatcacctat-taaaaacaaaatactcttgttaa 295  Q
     |||||||||||||  |||||||||| |||||||||||    
T  5825848 -atacatcacctataaaaaaacaaaagactcttgttaa 5825812  T

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Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 5827291 - 5827140
Alignment:
Q  18 gttgcctcatcaagtaaaagtattctagggtctttcaatatagctcttgcaa--------cattgtttttgtccac-tggtaactgtgtgcctctttcgc 108  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||        | |||||||||||||| || ||||||||||||||||||||    
T  5827291 gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc 5827192  T
Q  109 ttaccgatgtattgtaaccatccggaagagagcttatgaagttgtgtgcatt 160  Q
     |||||| |||||||||||| | |||||||||||||||||||||||||||||    
T  5827191 ctaccgaagtattgtaaccacctggaagagagcttatgaagttgtgtgcatt 5827140  T

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Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 5794883 - 5794793
Alignment:
Q  18 gttgcctcatcaagtaaaagtattctagggtctttcaatatagctcttgcaacattgtttttgtcca-ctggtaactgtgtgcctctttcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5794883 gttgcctcatcaagtaaaagtattctagggtctttcaatatagctcttgcaacattgtttttgtccacctggtaactgtgtgcctctttcg 5794793  T

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Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 182 - 295
Target Start/End: Complemental strand, 5781363 - 5781253
Alignment:
Q  182 ttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttcatatatacatcacctat-taaaaaca 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| |  |||||||    
T  5781363 ttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttc----atacatcacctgtaaaaaaaca 5781268  T
Q  281 aaatactcttgttaa 295  Q
    ||| |||||||||||    
T  5781267 aaagactcttgttaa 5781253  T

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Target: chr2; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 5767823 - 5767726
Alignment:
Q  161 ttctggtacatatccatcaccttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttcata 258  Q
    ||||||||||||||||||||||||  ||| |||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  5767823 ttctggtacatatccatcacctttgattctgcattaaatgatgcaacagttcttatgctaccaacagcatcatttgccacctgacttgcctcttcata 5767726  T

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Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 5830614 - 5830706
Alignment:
Q  166 gtacatatccatcaccttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttcata 258  Q
    |||||| ||||||||||||  ||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  5830614 gtacatgtccatcacctttgattctgcacaaaatgatgcaacagttctgatgctactaacggcatcatttgccacctgacttgcctcttcata 5830706  T

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Target: scaffold0159 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 274 - 527
Target Start/End: Complemental strand, 26481 - 26228
Alignment:
Q  274 aaaaacaaaatactcttgttaactaagtttgtcccaactcgagagaattgccaacagaaaaaagattatgaagtattagtttgaactcagtagaagccga 373  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  26481 aaaaacaaaatactcttgttaaccaagtttgtcccaactcgagagaattgccaacagaaaaaagattatgaagtatgagtttcaactcagtagaagccga 26382  T
Q  374 atcttccattacctatccgtccatatgaaccctcactcagacaaattcatcaaattgagcgatgcttgattcgtaatcagcaagtcttagaaatgttatg 473  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26381 atcttctattacctatccatccatatgaaccctcactcagccaaattcatcaaattgagcgatgcttgattcgtaatcagcaagtcttaaaaatgttatg 26282  T
Q  474 aacaatacgctctcctgagcctgtctaattttgataaggacagataaattcttc 527  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26281 aacaatacgctctcccgagcctgtctaattttgataaggacagataaattcttc 26228  T

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Target: scaffold0159; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 182 - 295
Target Start/End: Complemental strand, 26695 - 26585
Alignment:
Q  182 ttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttcatatatacatcacctat-taaaaaca 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| |  |||||||    
T  26695 ttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttc----atacatcacctgtaaaaaaaca 26600  T
Q  281 aaatactcttgttaa 295  Q
    ||| |||||||||||    
T  26599 aaagactcttgttaa 26585  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 29328141 - 29328233
Alignment:
Q  166 gtacatatccatcaccttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttcata 258  Q
    |||||| ||||||||||||  ||| ||||||||||| |||||||||||||||||||  ||||||||| |||| ||||||||||||||||||||    
T  29328141 gtacatgtccatcacctttgattctgcacaaaatgacgcaacagttctgatgctactgacagcatcacttgccacctgacttgcctcttcata 29328233  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 29327208 - 29327275
Alignment:
Q  93 tgtgtgcctctttcgcttaccgatgtattgtaaccatccggaagagagcttatgaagttgtgtgcatt 160  Q
    ||||||||||||||||  || || || |  |||||||| |||||||| ||||||||||||||||||||    
T  29327208 tgtgtgcctctttcgccaacagaagtgtcataaccatcaggaagagaacttatgaagttgtgtgcatt 29327275  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 51158681 - 51158596
Alignment:
Q  173 tccatcaccttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgcctcttcata 258  Q
    ||||| ||||| | |||||||||||| || ||||| ||||| ||||| || |||||||||||||| || |||||||| ||||||||    
T  51158681 tccattaccttcttttcagcacaaaaagaagcaactgttcttatgctccctacagcatcatttgccacttgacttgcttcttcata 51158596  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 51147526 - 51147450
Alignment:
Q  173 tccatcaccttttgttcagcacaaaatgatgcaacagttctgatgctaccaacagcatcatttgcaacctgacttgc 249  Q
    ||||||||||| |  ||||||||||| || | ||||||||| || || || |||||||||||||| || ||||||||    
T  51147526 tccatcaccttctcctcagcacaaaaagaggaaacagttcttatactccctacagcatcatttgccacttgacttgc 51147450  T

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