View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_15 (Length: 531)
Name: NF10121_low_15
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 44347558 - 44348066
Alignment:
| Q |
1 |
acaaaatatttggtagagaagttcttataggataacttttgtctccaagatcttaaacatgcctaacaatctactattgacttattgttgcaaggagtta |
100 |
Q |
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| T |
44347558 |
acaaaatatttggtagagaagttcttgtaggataacttttgtctccaagatcttaaacatgcctaacaatctactattgacttattgttgcaaggagtta |
44347657 |
T |
|
| Q |
101 |
aaaaacaagttggaaagtaaataacacagtgaaattaggcagaatgtgaaagatgtccacagtaaaacaatat-atagctacatcatggacctacattca |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44347658 |
aaaaacaagttggaaagtaaataatacagtgaaattaggcagaatgtgaaagatgtccacagtaaaacaatattatagctacatcatggacctacattca |
44347757 |
T |
|
| Q |
200 |
cggtcacagtcacaaccggagtgtaattatttcattctaatttgccgagtggtgtaacgaacgacttcctttcaacccacaaagataactttttcgccta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44347758 |
cggtcacagtcacaaccggagtgtaattatttcattctaatttgccgagtggtgtaacgaacgacttcctttcaacccacaaagataactttttcgccta |
44347857 |
T |
|
| Q |
300 |
tgagattgtttcatagtctttgctgatgatacaactggtgtcaatgtctcaatgtcatggttacaattctcaattggatgtgtagattcataggcatcat |
399 |
Q |
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| T |
44347858 |
tgagattgtttcatagtctttgctgatgatacaactggtgtcaatgtctcaatgtcatggttacaattctcaattggat---------------catcat |
44347942 |
T |
|
| Q |
400 |
tgttggcgtgcttgtcaagccacgtgatgatgtcttcaaaaactttttcaatgttgtcatcaggctcaccagatgttaaaccatgccacattccagggta |
499 |
Q |
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| T |
44347943 |
tgttggcgtgcttgtcaagccatgtgatgatgtcttcaaaaactttttcaatgttgtcatcaggctcaccagatgttaaaccatgccacattccagggta |
44348042 |
T |
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| Q |
500 |
caatttaattgtcttatctctgct |
523 |
Q |
| |
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| T |
44348043 |
caatttaattgtcttatctttgct |
44348066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 456 - 514
Target Start/End: Complemental strand, 39562662 - 39562604
Alignment:
| Q |
456 |
tcatcaggctcaccagatgttaaaccatgccacattccagggtacaatttaattgtctt |
514 |
Q |
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||||||||||| |||| |||||| |||||||||||||||||||||||||| || ||||| |
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| T |
39562662 |
tcatcaggctccccagctgttaagccatgccacattccagggtacaattttatggtctt |
39562604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 524
Target Start/End: Original strand, 52216331 - 52216379
Alignment:
| Q |
476 |
taaaccatgccacattccagggtacaatttaattgtcttatctctgctt |
524 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||| ||||| |
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| T |
52216331 |
taaaccatgccacattccagggtacaatttcagtgtcttatctttgctt |
52216379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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