View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_17 (Length: 493)
Name: NF10121_low_17
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 251 - 479
Target Start/End: Original strand, 32235766 - 32235994
Alignment:
| Q |
251 |
tttgtgaatggagagaggaagagaggttaattagggcataggaagtgaagtgatgggaaaaattatgaaaaagagggagaagaggtgatgacattagctg |
350 |
Q |
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| T |
32235766 |
tttgtgaatggagagaggaagagaggttaattagggcataggaagtgaagtgatgggaaaaattatgaaaaagagggagaagaggtgatgacattagctg |
32235865 |
T |
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| Q |
351 |
tgaatgtattaatgagaaacaagcaagagacacatgaagtgatataattgccaaggaaaggaaatgaaggggaccttaccttactattgattcatctcaa |
450 |
Q |
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| T |
32235866 |
tgaatgtattaatgagaaacaagcaagagacacatgaagtgatataattgccaaggaaaggaaatgaaggggaccttaccttactattgattcatctcaa |
32235965 |
T |
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| Q |
451 |
ttaattgggagattttgggtgttataatt |
479 |
Q |
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| T |
32235966 |
ttaattgggagattttgggtgttataatt |
32235994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 164
Target Start/End: Original strand, 32235531 - 32235685
Alignment:
| Q |
10 |
atcaatttcaaccccatgtggaacttgatgcatgttctggtggcgtattctttgaaggttatagcacaaagaacgtggttttctgttggaaaaagaatta |
109 |
Q |
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| T |
32235531 |
atcaatttcaaccccatgtggaacttgatgcatgttctggtggtgtattctttgaagattatagcacaaagaacgtggttttctgttggaaaaagaatta |
32235630 |
T |
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| Q |
110 |
cattggtggagatttcttgaggctgatggagagggaagaaacctagagtttgctg |
164 |
Q |
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| T |
32235631 |
caatggtggaggtttcttgaggaagatggagatggaagaaacctagagtttgctg |
32235685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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