View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_18 (Length: 488)
Name: NF10121_low_18
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 52373752 - 52373291
Alignment:
| Q |
19 |
gctaaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccat |
118 |
Q |
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| T |
52373752 |
gctaaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccat |
52373653 |
T |
|
| Q |
119 |
tttgaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373652 |
tttgaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacg |
52373553 |
T |
|
| Q |
219 |
aactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggtaaccagaggcattacttggagatgaaacccaaatttctcct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373552 |
aactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggtaaccagaggcattacttggagatgaaacccaaatttctcct |
52373453 |
T |
|
| Q |
319 |
tcaacaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccatgtcttcttgttcctcaagccttgcaactggcaaaagctttttat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373452 |
tcaacaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccatgtcttcttgttcctcaagccttgcaactggcaaaagctttttat |
52373353 |
T |
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| Q |
419 |
gagttggaaaagtttcttcgtcatatctccatgcagttgaaacaaaggtacaattctctgct |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373352 |
gagttggaaaagtttcttcgtcatatctccatgcagttgaaacaaaggtacaattctctgct |
52373291 |
T |
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