View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_19 (Length: 479)

Name: NF10121_low_19
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_19
NF10121_low_19
[»] chr6 (3 HSPs)
chr6 (1-469)||(1786880-1787352)
chr6 (395-457)||(18860052-18860114)
chr6 (395-451)||(16477086-16477142)
[»] chr4 (42 HSPs)
chr4 (395-463)||(12178908-12178976)
chr4 (395-463)||(12184292-12184360)
chr4 (395-463)||(12189627-12189695)
chr4 (395-463)||(12172438-12172506)
chr4 (395-463)||(12182388-12182456)
chr4 (395-463)||(12189283-12189351)
chr4 (397-463)||(12169151-12169217)
chr4 (395-461)||(12180473-12180539)
chr4 (395-461)||(12180811-12180877)
chr4 (395-461)||(12182047-12182113)
chr4 (395-455)||(12169474-12169534)
chr4 (395-463)||(12177328-12177396)
chr4 (395-461)||(12170057-12170123)
chr4 (395-463)||(12173104-12173172)
chr4 (395-463)||(12184954-12185022)
chr4 (395-463)||(12185298-12185366)
chr4 (395-463)||(12186603-12186671)
chr4 (395-463)||(12186946-12187014)
chr4 (395-463)||(12187290-12187358)
chr4 (395-463)||(12188597-12188665)
chr4 (398-461)||(12183950-12184013)
chr4 (395-454)||(12188949-12189008)
chr4 (395-461)||(12172765-12172831)
chr4 (395-461)||(12174115-12174181)
chr4 (395-461)||(12174781-12174847)
chr4 (395-461)||(12178567-12178633)
chr4 (395-461)||(12184614-12184680)
chr4 (395-463)||(12174454-12174522)
chr4 (395-461)||(12173433-12173499)
chr4 (395-461)||(12173774-12173840)
chr4 (395-461)||(12179234-12179300)
chr4 (395-453)||(12182722-12182780)
chr4 (395-445)||(12170661-12170711)
chr4 (395-461)||(12175124-12175189)
chr4 (398-463)||(12176985-12177052)
chr4 (395-444)||(12169779-12169828)
chr4 (395-445)||(12170367-12170417)
chr4 (397-450)||(4374979-4375032)
chr4 (426-463)||(12185641-12185678)
chr4 (426-463)||(12187633-12187670)
chr4 (426-459)||(17817947-17817980)
chr4 (430-463)||(19156126-19156159)
[»] chr5 (2 HSPs)
chr5 (395-451)||(21825768-21825824)
chr5 (398-452)||(25904730-25904784)
[»] chr2 (50 HSPs)
chr2 (395-451)||(24621693-24621749)
chr2 (395-451)||(24622012-24622068)
chr2 (395-451)||(24622331-24622387)
chr2 (395-451)||(24622615-24622671)
chr2 (395-451)||(24622899-24622955)
chr2 (395-451)||(24623502-24623558)
chr2 (395-451)||(24623821-24623877)
chr2 (395-451)||(24624414-24624470)
chr2 (395-451)||(24624733-24624789)
chr2 (395-451)||(24625017-24625073)
chr2 (395-451)||(24625336-24625392)
chr2 (395-451)||(24626909-24626965)
chr2 (395-451)||(24631395-24631451)
chr2 (395-451)||(24631714-24631770)
chr2 (395-451)||(24631998-24632054)
chr2 (395-451)||(24632282-24632338)
chr2 (395-451)||(24632601-24632657)
chr2 (395-451)||(24632885-24632941)
chr2 (395-451)||(24633169-24633225)
chr2 (395-451)||(24633488-24633544)
chr2 (395-451)||(24633807-24633863)
chr2 (395-451)||(24634091-24634147)
chr2 (395-451)||(24634694-24634750)
chr2 (395-451)||(24638773-24638829)
chr2 (395-451)||(24639092-24639148)
chr2 (395-451)||(24623218-24623274)
chr2 (398-451)||(24626298-24626351)
chr2 (395-451)||(24627228-24627284)
chr2 (395-451)||(24627512-24627568)
chr2 (395-451)||(24631111-24631167)
chr2 (395-451)||(24625978-24626034)
chr2 (395-451)||(24634410-24634466)
chr2 (395-451)||(24638454-24638510)
chr2 (398-451)||(3348060-3348113)
chr2 (398-451)||(24637837-24637890)
chr2 (395-451)||(24619612-24619671)
chr2 (395-451)||(24620760-24620819)
chr2 (410-451)||(24626621-24626662)
chr2 (410-451)||(24637514-24637555)
chr2 (395-451)||(24621082-24621142)
chr2 (412-451)||(24621405-24621444)
chr2 (412-451)||(24625655-24625694)
chr2 (395-451)||(24635565-24635625)
chr2 (395-451)||(24636266-24636326)
chr2 (395-451)||(24636589-24636649)
chr2 (395-451)||(24639441-24639501)
chr2 (395-451)||(24639764-24639824)
chr2 (395-451)||(24640087-24640147)
chr2 (395-451)||(24635242-24635302)
chr2 (395-451)||(24636912-24636972)
[»] scaffold1024 (1 HSPs)
scaffold1024 (395-451)||(56-112)
[»] chr1 (2 HSPs)
chr1 (398-447)||(2557900-2557949)
chr1 (414-449)||(12891610-12891645)
[»] chr3 (3 HSPs)
chr3 (395-451)||(14903161-14903217)
chr3 (398-447)||(30729418-30729467)
chr3 (395-443)||(16990096-16990144)
[»] chr7 (2 HSPs)
chr7 (410-462)||(42435297-42435349)
chr7 (407-450)||(19426010-19426053)
[»] chr8 (2 HSPs)
chr8 (424-455)||(38580338-38580369)
chr8 (399-463)||(13642504-13642566)


Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 1787352 - 1786880
Alignment:
Q  1 tattttctttgtatctatacaaactagatttactacgctcaacaaaagtacgcagtcacgcattcaggataatcttgatt---cgatcaagatgaccatt 97  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  1787352 tattttctttgtatctatacaaactagatttattacggtcaacaaaagtacgcagtcacgcattcaggataatcttgattgttcgatcaagatgaccatt 1787253  T
Q  98 caattaagattagacgatttccgatatcagactatgtgaatgtgggttc-tcctaattgcaggaaccctagtcttgtgtggtcacaaacatttagataca 196  Q
    |||| ||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1787252 caatcaagatcagacgattcccaatatcagactacgtgaatgtgggttcctcctaattgcaggaaccctagtcttgtatggtcacaaacatttagataca 1787153  T
Q  197 ccatttagtcacatatacaagtcttatgtggtcacaaacattttgatacatacaccatttaatcacaaatacatatttgaaaaagttataaaaaataaaa 296  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1787152 tcatttagtcacatatacaagtcttatgtggtcacaaacattttgatacatacaccatttaatcacaaatacatatttgaaaaagttataaaaaataaaa 1787053  T
Q  297 gaattgaataaagtacannnnnnnaggaaagaaaaatatagttacacctaagtattttccgaatatattatctttacatttttaattcaaactaactcgg 396  Q
    |||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  1787052 gaattgaataaagtacatttttttaggaaagaaaaatatagttatacctaagtattttccgaatatattgtctttacatttttaattcaaactaacttgg 1786953  T
Q  397 gcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccaccctttttgtaacc 469  Q
     |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  1786952 acgagagtagtattaggatgggtgaccttctggtaagtctttgtgttgcacctctcccaccctttgtgtaacc 1786880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 18860052 - 18860114
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacc 457  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  18860052 gggcgagagtagtactaggatgggtgacctcctggaaagtccttgtgttgcacctctcccacc 18860114  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 16477142 - 16477086
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  16477142 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 16477086  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12178976 - 12178908
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12178976 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12178908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12184360 - 12184292
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12184360 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12184292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12189695 - 12189627
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12189695 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12189627  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12172506 - 12172438
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  12172506 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtattgcacctctcccaccgttttt 12172438  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12182456 - 12182388
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12182456 gggcgagagtaggactaggatgggtgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12182388  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12189351 - 12189283
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  12189351 gggcgagagtagtactaggatggatgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12189283  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 397 - 463
Target Start/End: Complemental strand, 12169217 - 12169151
Alignment:
Q  397 gcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  12169217 gcgagagtagtactaggatgggtgacctcctgggaagtccttgtattgcacctctcccacctttttt 12169151  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12180539 - 12180473
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  12180539 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgtttaacctctcccacccttt 12180473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12180877 - 12180811
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  12180877 gggcgagagtagtactaggatgggtgacctcctggaaagtccttgtgttgcacctctcccacgcttt 12180811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12182113 - 12182047
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  12182113 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgtttaacctctcccacccttt 12182047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 12169534 - 12169474
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctccca 455  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||    
T  12169534 gggcgagagtagttctaggatgggtgaccttttgggaagtccttgtgttgcacctctccca 12169474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12177396 - 12177328
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||||| |||||    
T  12177396 gggcgagagtagtactaggatgggtgaccacctgggaagtccttgtattgcacctctcccaccattttt 12177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12170123 - 12170057
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  12170123 gggcgagagtagtactatgatgggtgacctcttgggaagtccttgtgttgcacctctcccatccttt 12170057  T

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Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12173172 - 12173104
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| ||||||||||||||| || |||||||||||| |||||| ||||||||| |||||    
T  12173172 gggcgagagtagtactaggatgggtgacctcctaggaagtccttgtattgcacatctcccaccattttt 12173104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12185022 - 12184954
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| ||||||||||| ||| |||||| |||||| |||||||||||||||||| |||||    
T  12185022 gggcgagagtagtactaggatgggtggcctcctgggaggtccttttgttgcacctctcccaccattttt 12184954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12185366 - 12185298
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    ||||||||||||||  |||||||||| ||| || ||||||||||||||||||||||||||||| |||||    
T  12185366 gggcgagagtagtacaaggatgggtgtcctcctaggaagtccttgtgttgcacctctcccaccattttt 12185298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12186671 - 12186603
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    ||||||||||||||  |||||||||| ||| ||| |||||||||||||||||||||||||||| |||||    
T  12186671 gggcgagagtagtacgaggatgggtgtcctcctgagaagtccttgtgttgcacctctcccaccattttt 12186603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12187014 - 12186946
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| ||||||||||| ||| |||||| |||||| |||||||||||||||||| |||||    
T  12187014 gggcgagagtagtactaggatgggtggcctcctgggaggtccttttgttgcacctctcccaccattttt 12186946  T

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Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12187358 - 12187290
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    ||||||||||||||  |||||||||| ||| || ||||||||||||||||||||||||||||| |||||    
T  12187358 gggcgagagtagtacaaggatgggtgtcctcctaggaagtccttgtgttgcacctctcccaccattttt 12187290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12188665 - 12188597
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    ||||||||||||||  |||||||||| ||| ||| |||||||||||||||||||||||||||| |||||    
T  12188665 gggcgagagtagtacgaggatgggtgtcctcctgagaagtccttgtgttgcacctctcccaccattttt 12188597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 398 - 461
Target Start/End: Complemental strand, 12184013 - 12183950
Alignment:
Q  398 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||  ||||||||||||||||    
T  12184013 cgagagtagtactaggatgggtgacctccttggaagtccttgtgtttaacctctcccacccttt 12183950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 395 - 454
Target Start/End: Complemental strand, 12189008 - 12188949
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctccc 454  Q
    |||||||||||||  ||||||||||||||| ||||||||| |||||||||||||||||||    
T  12189008 gggcgagagtagttctaggatgggtgacctcctgggaagttcttgtgttgcacctctccc 12188949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12172831 - 12172765
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| |||||||| |||||| ||||| ||||||||| ||| ||||||||||||||||    
T  12172831 gggcgagagtagtactaggatggatgacctcctgggtagtccttgtattgaacctctcccacccttt 12172765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12174181 - 12174115
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| |||||||| |||||| |||| |||||||||||||  ||||||||||||||||    
T  12174181 gggcgagagtagtactaggatggatgacctcctggaaagtccttgtgtttaacctctcccacccttt 12174115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12174847 - 12174781
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| |||||||| ||| || ||||| ||||||||||||| ||||||||||||||||    
T  12174847 gggcgagagtagtactaggatggatgatctcctgggtagtccttgtgttgaacctctcccacccttt 12174781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12178633 - 12178567
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| || |||||||| ||| ||||||||||||||||||  ||||||||||||||||    
T  12178633 gggcgagagtagtactatgatgggtgtcctcctgggaagtccttgtgtttaacctctcccacccttt 12178567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12184680 - 12184614
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    ||||||||||||||  |||||||||||||| |||| |||||||||||||||||||||| ||| ||||    
T  12184680 gggcgagagtagtaccaggatgggtgacctcctggaaagtccttgtgttgcacctctctcacgcttt 12184614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 12174522 - 12174454
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||| ||||||||||||| | || |||||||||||| |||||| ||||||||| |||||    
T  12174522 gggcgagagtagtactaggatgggtgacgtcctaggaagtccttgtattgcacatctcccaccattttt 12174454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12173499 - 12173433
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| |||||||| ||| || ||||| |||||||||| || ||||||||||||||||    
T  12173499 gggcgagagtagtactaggatggatgatctcctgggtagtccttgtgctgaacctctcccacccttt 12173433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12173840 - 12173774
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    ||||| |||||||| |||||||| |||||| |||| |||||||||||||  ||||||||||||||||    
T  12173840 gggcgggagtagtactaggatggatgacctcctggaaagtccttgtgtttaacctctcccacccttt 12173774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12179300 - 12179234
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    |||||||||||||| |  ||||| |||||| ||||||||||||||||||| ||||||||||| ||||    
T  12179300 gggcgagagtagtactttgatggatgacctcctgggaagtccttgtgttgaacctctcccacgcttt 12179234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 12182780 - 12182722
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcc 453  Q
    |||||||||||||| | |||||| |||||| ||||||||||||||||||| ||||||||    
T  12182780 gggcgagagtagtacttggatggatgacctcctgggaagtccttgtgttgaacctctcc 12182722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 445
Target Start/End: Complemental strand, 12170711 - 12170661
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgc 445  Q
    |||||||||||||| || |||||||||||| |||||||||| |||||||||    
T  12170711 gggcgagagtagtactatgatgggtgacctcctgggaagtcattgtgttgc 12170661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 12175189 - 12175124
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 461  Q
    ||||| |||||||| |||||||| |||| | ||||||||||||||||||  ||||||||||||||||    
T  12175189 gggcgggagtagtactaggatggatgac-tcctgggaagtccttgtgtttaacctctcccacccttt 12175124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 463
Target Start/End: Complemental strand, 12177052 - 12176985
Alignment:
Q  398 cgagagtagtattaggatgggtgaccttct---gggaagtccttgtgttgcacctctcccacccttttt 463  Q
    ||||||||||| ||||||||||||||| ||   ||||||||||| |||||||||||||||||| |||||    
T  12177052 cgagagtagtactaggatgggtgacct-ctagggggaagtccttttgttgcacctctcccaccattttt 12176985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 12169828 - 12169779
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttg 444  Q
    |||||||||||||| || |||||||||||| |||||||||| ||||||||    
T  12169828 gggcgagagtagtactatgatgggtgacctcctgggaagtcattgtgttg 12169779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 445
Target Start/End: Complemental strand, 12170417 - 12170367
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgc 445  Q
    |||||||||||||| || |||||||||||| || ||||||| |||||||||    
T  12170417 gggcgagagtagtactatgatgggtgacctcctaggaagtcattgtgttgc 12170367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 450
Target Start/End: Complemental strand, 4375032 - 4374979
Alignment:
Q  397 gcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctc 450  Q
    |||||||||||| ||||||| ||||| | || |||| |||||||||||||||||    
T  4375032 gcgagagtagtaataggatgtgtgacttcctaggaaatccttgtgttgcacctc 4374979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 12185678 - 12185641
Alignment:
Q  426 ctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  12185678 ctgggaagtccttgtgtcgcacctctcccaccattttt 12185641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 12187670 - 12187633
Alignment:
Q  426 ctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  12187670 ctgggaagtccttgtgtcgcacctctcccaccattttt 12187633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 459
Target Start/End: Original strand, 17817947 - 17817980
Alignment:
Q  426 ctgggaagtccttgtgttgcacctctcccaccct 459  Q
    |||||||||||||||||||||||| |||||||||    
T  17817947 ctgggaagtccttgtgttgcacctatcccaccct 17817980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 463
Target Start/End: Complemental strand, 19156159 - 19156126
Alignment:
Q  430 gaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||||||||||||||||||||| |||||    
T  19156159 gaagtccttgtgttgcacctctcccaccattttt 19156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 21825768 - 21825824
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  21825768 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 21825824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 25904784 - 25904730
Alignment:
Q  398 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctc 452  Q
    |||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||    
T  25904784 cgagagtagtattaagatggatgaccttttggaaagtccttgtgttgcacctctc 25904730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 50)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24621749 - 24621693
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24621749 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24621693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24622068 - 24622012
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24622068 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24622012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24622387 - 24622331
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24622387 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24622331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24622671 - 24622615
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24622671 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24622615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24622955 - 24622899
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24622955 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24622899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24623558 - 24623502
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24623558 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24623502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24623877 - 24623821
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24623877 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24623821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24624470 - 24624414
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24624470 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24624414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24624789 - 24624733
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24624789 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24624733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24625073 - 24625017
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24625073 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24625017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24625392 - 24625336
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24625392 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24625336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24626965 - 24626909
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24626965 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24626909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24631451 - 24631395
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24631451 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24631395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24631770 - 24631714
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24631770 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24631714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24632054 - 24631998
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24632054 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24631998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24632338 - 24632282
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24632338 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24632282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24632657 - 24632601
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24632657 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24632601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24632941 - 24632885
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24632941 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24632885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24633225 - 24633169
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24633225 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24633169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24633544 - 24633488
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24633544 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24633488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24633863 - 24633807
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24633863 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24633807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24634147 - 24634091
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24634147 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24634091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24634750 - 24634694
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24634750 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24634694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24638829 - 24638773
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24638829 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24638773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24639148 - 24639092
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24639148 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24639092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24623274 - 24623218
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  24623274 gggcgagagtagtnctaggatgggtgacctcctgggaagtccttgtgttgcacctct 24623218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 24626351 - 24626298
Alignment:
Q  398 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24626351 cgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24626298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24627284 - 24627228
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  24627284 gggcgagagtagtnctaggatgggtgacctcctgggaagtccttgtgttgcacctct 24627228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24627568 - 24627512
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||    
T  24627568 gggcgagagtagtactaggatgggtgacctcctgggaagtcnttgtgttgcacctct 24627512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24631167 - 24631111
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  24631167 gggcgagagtagtactaggatgggtgacctcntgggaagtccttgtgttgcacctct 24631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24626034 - 24625978
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  24626034 gggcgagagtagtactaggatgggtgacctcctgggaagtccttgttttgcacctct 24625978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24634466 - 24634410
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  24634466 gggcgagagtagtgctaggatgggtgacctcctgggaagtccttgtgttgcacctct 24634410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24638510 - 24638454
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  24638510 gggcgagagtagtgctaggatgggtgacctcctgggaagtccttgtgttgcacctct 24638454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 3348113 - 3348060
Alignment:
Q  398 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  3348113 cgagagtagtactaggatgggtgacctcctaggaagtccttgtgttgcacctct 3348060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 24637890 - 24637837
Alignment:
Q  398 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  24637890 cgagagtagtactaggatgggtgacctcctgggaagtccttgttttgcacctct 24637837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24619671 - 24619612
Alignment:
Q  395 gggcgagagtagtattag---gatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| |||   |||||||||||| ||||||||||||||||||||||||||    
T  24619671 gggcgagagtagtactagntggatgggtgacctcctgggaagtccttgtgttgcacctct 24619612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24620819 - 24620760
Alignment:
Q  395 gggcgagagtagtattag---gatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| |||   |||||||||||| ||||||||||||||||||||||||||    
T  24620819 gggcgagagtagtactagntggatgggtgacctcctgggaagtccttgtgttgcacctct 24620760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 24626662 - 24626621
Alignment:
Q  410 taggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  24626662 taggatgggtgacctcctgggaagtccttgtgttgcacctct 24626621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 24637555 - 24637514
Alignment:
Q  410 taggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  24637555 taggatgggtgacctcctgggaagtccttgtgttgcacctct 24637514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24621142 - 24621082
Alignment:
Q  395 gggcgagagtagtatta----ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||    ||||||||||||| ||||||||||||||||||||||||||    
T  24621142 gggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24621082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 412 - 451
Target Start/End: Complemental strand, 24621444 - 24621405
Alignment:
Q  412 ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  24621444 ggatgggtgacctcctgggaagtccttgtgttgcacctct 24621405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 412 - 451
Target Start/End: Complemental strand, 24625694 - 24625655
Alignment:
Q  412 ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  24625694 ggatgggtgacctcctgggaagtccttgtgttgcacctct 24625655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24635625 - 24635565
Alignment:
Q  395 gggcgagagtagtatta----ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||    ||||||||||||| ||||||||||||||||||||||||||    
T  24635625 gggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24635565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24636326 - 24636266
Alignment:
Q  395 gggcgagagtagtatta----ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||    ||||||||||||| ||||||||||||||||||||||||||    
T  24636326 gggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24636266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24636649 - 24636589
Alignment:
Q  395 gggcgagagtagtatta----ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||    ||||||||||||| ||||||||||||||||||||||||||    
T  24636649 gggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24636589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24639501 - 24639441
Alignment:
Q  395 gggcgagagtagtatta----ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||    ||||||||||||| ||||||||||||||||||||||||||    
T  24639501 gggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24639441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24639824 - 24639764
Alignment:
Q  395 gggcgagagtagtatta----ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||    ||||||||||||| ||||||||||||||||||||||||||    
T  24639824 gggcgagagtagtactaggnnggatgggtgacctcctgggaagtccttgtgttgcacctct 24639764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24640147 - 24640087
Alignment:
Q  395 gggcgagagtagtatta----ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||    ||||||||||||| ||||||||||||||||||||||||||    
T  24640147 gggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24640087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24635302 - 24635242
Alignment:
Q  395 gggcgagagtagtatta----ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||    ||||||||||||| | ||||||||||||||||||||||||    
T  24635302 gggcgagagtagtactaggatggatgggtgacctccngggaagtccttgtgttgcacctct 24635242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24636972 - 24636912
Alignment:
Q  395 gggcgagagtagtatta----ggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||    ||||||||||||| | ||||||||||||||||||||||||    
T  24636972 gggcgagagtagtactaggatggatgggtgacctccagggaagtccttgtgttgcacctct 24636912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 56 - 112
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  56 gggcgagagtagtactaggatgggtgacctcctgggaagtccgtgtgttgcacctct 112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 2557900 - 2557949
Alignment:
Q  398 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcac 447  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  2557900 cgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 2557949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 449
Target Start/End: Complemental strand, 12891645 - 12891610
Alignment:
Q  414 atgggtgaccttctgggaagtccttgtgttgcacct 449  Q
    ||||||||||||||||||||||||||||||||||||    
T  12891645 atgggtgaccttctgggaagtccttgtgttgcacct 12891610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 14903161 - 14903217
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 451  Q
    |||||||||||||| ||||||||||||||| |||  |||||||||||||||||||||    
T  14903161 gggcgagagtagtactaggatgggtgacctcctgaaaagtccttgtgttgcacctct 14903217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 30729467 - 30729418
Alignment:
Q  398 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcac 447  Q
    ||||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  30729467 cgagagtagcattaggatgggtgaccttctgaaaagtcattgtgttgcac 30729418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 16990096 - 16990144
Alignment:
Q  395 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgtt 443  Q
    |||||||||||||| ||||||| |||||||  |||||||||||||||||    
T  16990096 gggcgagagtagtactaggatgagtgacctattgggaagtccttgtgtt 16990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 42435349 - 42435297
Alignment:
Q  410 taggatgggtgaccttctgggaagtccttgtgttgcacctctcccaccctttt 462  Q
    ||||||| ||||| || |||||| |||||||||||||||||||||||| ||||    
T  42435349 taggatgagtgacgttatgggaaatccttgtgttgcacctctcccaccatttt 42435297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 450
Target Start/End: Complemental strand, 19426053 - 19426010
Alignment:
Q  407 tattaggatgggtgaccttctgggaagtccttgtgttgcacctc 450  Q
    ||||||||||||||||||||||| || |||||| ||||||||||    
T  19426053 tattaggatgggtgaccttctggaaaatccttgcgttgcacctc 19426010  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 455
Target Start/End: Complemental strand, 38580369 - 38580338
Alignment:
Q  424 ttctgggaagtccttgtgttgcacctctccca 455  Q
    ||||||||||||||||||||||||||||||||    
T  38580369 ttctgggaagtccttgtgttgcacctctccca 38580338  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 13642504 - 13642566
Alignment:
Q  399 gagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 463  Q
    |||||||||| || ||||||||||||  |||||| |||||||||||||  ||| |||||||||||    
T  13642504 gagagtagtactaagatgggtgacctcatgggaaatccttgtgttgca--tcttccacccttttt 13642566  T

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