View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_20 (Length: 479)
Name: NF10121_low_20
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_20 |
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| [»] chr4 (4 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 58 - 479
Target Start/End: Complemental strand, 56240858 - 56240437
Alignment:
| Q |
58 |
agataatatctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgattt |
157 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
56240858 |
agataaaatctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgatgt |
56240759 |
T |
|
| Q |
158 |
ctcttaggaccactagttctgccactaaggttctcctaaattcttactatgcattcattactcctctttcttacattttcatactccttatcnnnnnnnn |
257 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
56240758 |
ctcttaggtccactagttctgccactaaggttctcctaaattcttactatgcattcattactcctctttcttacattttcatattccttatcttttttct |
56240659 |
T |
|
| Q |
258 |
nnnnnaatgtttcacagctcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaacttgttctctctgtcgagatttaccataattttcg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
56240658 |
tgtttaatgtttcacagctcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaagttgttctctctgtcgagatttaccataattttcg |
56240559 |
T |
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| Q |
358 |
aaatggtgtcaaggtattcagtgcnnnnnnnnnggtattcaatgccatgcctacataattttgaaaatgtattttggataactactaccatcaaagttaa |
457 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56240558 |
aaatggtgtcaaggtattcagtgccaaaaaaaaggtattcaatgccatgcctacataattttgaaaatgtattttggataactactaccatcaaagttaa |
56240459 |
T |
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| Q |
458 |
catgtagggcctctgttctttt |
479 |
Q |
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|||||||||||||||||||||| |
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| T |
56240458 |
catgtagggcctctgttctttt |
56240437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 276 - 479
Target Start/End: Complemental strand, 23947048 - 23946834
Alignment:
| Q |
276 |
tcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaacttgttctctctgtcgagatttaccataattttcgaaatggtgtcaaggtatt |
375 |
Q |
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| T |
23947048 |
tcaacacactgggtcttcaggagcacatacctgtgcaggattcagaagttgttctctctgtcgagatttaccataattttcgtaaaggtgtcaagctatc |
23946949 |
T |
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| Q |
376 |
cagtgcnnnnnnnnnggtattcaatgccatgcctacataattttgaaaat---------gt--attttggataactactaccatcaaagttaacatgtag |
464 |
Q |
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|| ||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
23946948 |
caatgccaaaaaaaaggtattcaatgtcatgcctacataattttgaaaataataattcagttcattttggataactactaccatcaaagttaacatgtag |
23946849 |
T |
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| Q |
465 |
ggcctctgttctttt |
479 |
Q |
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| T |
23946848 |
gacctctattctttt |
23946834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 23947178 - 23947055
Alignment:
| Q |
58 |
agataatatctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgattt |
157 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
23947178 |
agataaaatctatctaatctaattcagctatctttctttagtcctgattgcaggatcaataaatctgccaacaaatcaatcaaaactcaaaggatgatgt |
23947079 |
T |
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| Q |
158 |
ctcttaggaccactagttctgcca |
181 |
Q |
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|||||||| |||| ||||| |||| |
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| T |
23947078 |
ctcttaggtccacaagttccgcca |
23947055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 56240941 - 56240890
Alignment:
| Q |
5 |
tcacacttcattcgtttcatttagtaatagtatactattcttcttactcaat |
56 |
Q |
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| T |
56240941 |
tcacacttcattcatttcagttagtaatagtatactattcttcttactcaat |
56240890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 276 - 479
Target Start/End: Original strand, 16105896 - 16106110
Alignment:
| Q |
276 |
tcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaacttgttctctctgtcgagatttaccataattttcgaaatggtgtcaaggtatt |
375 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |
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| T |
16105896 |
tcaacacactgggtcttcaggagcacatacctgtgcaggattcagaagttgttctctctgtcgagattttccataattttcgaaaaggtgtcaagctatc |
16105995 |
T |
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| Q |
376 |
cagtgcnnnnnnnnnggtattcaatgccatgcctacataattttgaaaat---------gt--attttggataactactaccatcaaagttaacatgtag |
464 |
Q |
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|| ||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| |
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| T |
16105996 |
caatgccaaaaaaaaggtattcaatgtcatgcctacataattttgaaaataataattcagttcattttggataactactaccatcaaagttaacatatag |
16106095 |
T |
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| Q |
465 |
ggcctctgttctttt |
479 |
Q |
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| T |
16106096 |
gacctctattctttt |
16106110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 16105766 - 16105889
Alignment:
| Q |
58 |
agataatatctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgattt |
157 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
16105766 |
agataacatctatctaatctaattcagctatctttctttagtcctgattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgatgt |
16105865 |
T |
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| Q |
158 |
ctcttaggaccactagttctgcca |
181 |
Q |
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|||||||| |||| ||||| |||| |
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| T |
16105866 |
ctcttaggtccacaagttccgcca |
16105889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 16624287 - 16624399
Alignment:
| Q |
263 |
aatgtttcacagctcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaacttgttctctctgtcgagatttaccataattttcgaaatg |
362 |
Q |
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||||||| ||| ||||||||| || |||||||||||||||||| |||| ||| ||||| ||||||| ||||| ||||||||||||||| ||| ||| | |
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| T |
16624287 |
aatgtttgtcaggtcaacacaggaggacttcaggagcacatacctttgcatgatccagaagttgttctttctgtggagatttaccataatgttcaaaaag |
16624386 |
T |
|
| Q |
363 |
gtgtcaaggtatt |
375 |
Q |
| |
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||||||||||||| |
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| T |
16624387 |
gtgtcaaggtatt |
16624399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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