View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_21 (Length: 469)
Name: NF10121_low_21
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_21 |
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| [»] scaffold0021 (2 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 156538 - 156288
Alignment:
| Q |
18 |
catacaatcaacctttataacctaaaaaggattaatgaaggtttaaaagtgtttacacaattgttctggtaatcttgatcttttacataaaaatcaatga |
117 |
Q |
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| T |
156538 |
catacaatcaacctttataacctaaaaaggattaatgaaggtttaaaagtgtttacacaattgttctggtaatcttgatcttttacataaaaatcaatga |
156439 |
T |
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| Q |
118 |
cctctcaaggtttggtcaggttcttgttgatatatagtttggtctgacaatgacctaagctctattagattcgctcgcgctttgtaccagtcaatatcga |
217 |
Q |
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| T |
156438 |
cctctcaaggtttggtcaggttcttgttgatatatagtttggtctgacaatgacctaagctctattagattcgctcgcgctttgtaccagtcaatatcga |
156339 |
T |
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| Q |
218 |
gtatgctacttctagtagaatacaaaccaattcaaaagtttgcgagtatcc |
268 |
Q |
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| T |
156338 |
gtatgctacttctagtagaatacaaaccaattcaaaagtttgcgagtatcc |
156288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 320 - 459
Target Start/End: Complemental strand, 156236 - 156097
Alignment:
| Q |
320 |
ctgttatgtgtggtttctattcttgctgctgctatacaccgaaatagctataatctatggtacaaaaaagcagaccaaaaagtaagctctgtacaaaaaa |
419 |
Q |
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| T |
156236 |
ctgttatgtgtggtttctattcttgctgctgctatacaccgaaatagctataatctatggtacaaaaaagcagaccaaaaagtaagctctgtacaaaaaa |
156137 |
T |
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| Q |
420 |
ctccatccatcatcagatttggttagtagaactctctctg |
459 |
Q |
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| T |
156136 |
ctccatccatcatcagatttggttagtagaactctctctg |
156097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 11728483 - 11728544
Alignment:
| Q |
21 |
acaatcaacctttataacctaaaaaggattaatgaaggtttaaaagtgtttacacaattgtt |
82 |
Q |
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| T |
11728483 |
acaatccacctttatatcctaaagaggattaatgaagctttacaactgtttacacaattgtt |
11728544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 33699884 - 33699962
Alignment:
| Q |
21 |
acaatcaacctttataacctaaaaaggattaatgaaggtttaaaagtgtttacacaattgttctggtaatcttgatctt |
99 |
Q |
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| T |
33699884 |
acaatccacctttataccctaaagaggattagtgaagctttacaattgatgactcaattgttcttgtgatcttgatctt |
33699962 |
T |
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