View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_26 (Length: 450)
Name: NF10121_low_26
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Original strand, 4676741 - 4677168
Alignment:
| Q |
7 |
agatgaagttgatactgaaactgagagtgaagttgatggtatattactatgcaaatgattctattgtatttgtatacttcnnnnnnnnnnnnnnnnnnnn |
106 |
Q |
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| T |
4676741 |
agatgaagttgatactgaaactgagagtgaagatgatggtatattactatgcaaatgattctattgtatttgtatacttctttttttcttttttcagttt |
4676840 |
T |
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| Q |
107 |
nngattcttagaattttaatacagtttgttctcctaaacaaccaagaatgcaaattagtgatgatagtccatttagaacacaagggactcaatctatatt |
206 |
Q |
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| T |
4676841 |
ttgattcttagaattttgatacagtttgttctcctaaacaaccaagaatgcaaattagtgatgatagtccatttagaacacaagggactcaatctatatt |
4676940 |
T |
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| Q |
207 |
ctcaagtcaaatatcaggcaaggattcattccatttcaattcattttatacaagatttcgataaattcgatttttagaactgtgatttgatgatttcatg |
306 |
Q |
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| T |
4676941 |
ctcaagtcaaatatcaggcaaggattcattccatttcaattcattttatacaagatttcgataaattcgatttttagaactgtgatttgatgatttcatg |
4677040 |
T |
|
| Q |
307 |
tttgtaattattcagatacatcttttaaaaagggatgcaaaacaagacacagaagaggaaaatcagaaactttgcgtgctcagtatataaatactaagga |
406 |
Q |
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| T |
4677041 |
tttgtaattattcagatacatcttttaaaaagggatgcaaaacaagacacagaagaggaaaatcagaaactttgcgtgctcagtatataaatactaagga |
4677140 |
T |
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| Q |
407 |
agtgaggtatggtttgcaacctagttat |
434 |
Q |
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| T |
4677141 |
agtgaggtatggtttgcaacctagttat |
4677168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 352 - 414
Target Start/End: Complemental strand, 40778089 - 40778027
Alignment:
| Q |
352 |
gacacagaagaggaaaatcagaaactttgcgtgctcagtatataaatactaaggaagtgaggt |
414 |
Q |
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| T |
40778089 |
gacacagaagaggaaaatcagaaactttgcgtgctcaatacataaatacgaaggaagtgaggt |
40778027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 40771380 - 40771315
Alignment:
| Q |
352 |
gacacagaagaggaaaatcagaaactttgcgtgctcagtatataaatactaaggaagtgaggtatg |
417 |
Q |
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| T |
40771380 |
gacacagaagaagaaaatcagaaactttgcgtgctcaatacataaataccaaggaagtgaggtatg |
40771315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 40779738 - 40779697
Alignment:
| Q |
7 |
agatgaagttgatactgaaactgagagtgaagttgatggtat |
48 |
Q |
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| T |
40779738 |
agatgaagctgacactgaaactgagagtgaagatgatggtat |
40779697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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