View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_29 (Length: 437)

Name: NF10121_low_29
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_29
NF10121_low_29
[»] chr5 (6 HSPs)
chr5 (1-419)||(40181391-40181810)
chr5 (135-196)||(40180938-40180999)
chr5 (331-387)||(38605904-38605960)
chr5 (48-83)||(38606229-38606264)
chr5 (154-223)||(38606068-38606137)
chr5 (166-223)||(41885617-41885674)
[»] chr8 (9 HSPs)
chr8 (129-315)||(44459244-44459430)
chr8 (129-315)||(44466777-44466963)
chr8 (154-223)||(34502619-34502688)
chr8 (336-408)||(44460150-44460222)
chr8 (336-408)||(44467683-44467755)
chr8 (48-79)||(44459145-44459176)
chr8 (48-79)||(44466678-44466709)
chr8 (154-236)||(44459962-44460044)
chr8 (154-236)||(44467495-44467577)
[»] chr1 (1 HSPs)
chr1 (135-408)||(46358821-46359092)


Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 40181810 - 40181391
Alignment:
Q  1 cgtttacatatcgtgacaacgacgacaacgtcatcaccgcctccaaagatttccagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40181810 cgtttacatatcgtgacaacgacgacaacgtcatcaccgcctccaaagatttacagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcag 40181711  T
Q  101 gtacaacaaagacttgaccaatctagttcaacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaacccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  40181710 gtacaacaaagacttgaccaatctagttcaacatcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaacccta 40181611  T
Q  201 aaagttccacctcagaatcttatatacttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaa 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181610 gaagttccacctcagaatcttatatacttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaa 40181511  T
Q  301 taagcactgctgttcactatgattttaatgttaaactaaggaagaaatacatatt-ttttctgtgggacatgcttaagaaaattggccgctatgaaactg 399  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||    
T  40181510 taagcactactgttcactatgatttcaatgttaaactaaggaagaaatacatatttttttctgtgggacatgcttaagtatattggccgctatgaaactg 40181411  T
Q  400 actttcttaacgcaaggatt 419  Q
    |||||||||| |||||||||    
T  40181410 actttcttaatgcaaggatt 40181391  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
Q  135 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac 196  Q
    ||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | ||||||    
T  40180999 catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac 40180938  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 38605960 - 38605904
Alignment:
Q  331 ttaaactaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggcc 387  Q
    ||||||||||||||||  ||||| |||||||||||||  |||||||||| |||||||    
T  38605960 ttaaactaaggaagaatgacatactttttctgtgggatttgcttaagaatattggcc 38605904  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 38606264 - 38606229
Alignment:
Q  48 gatttccagaaagtgatgagtcttcttagtaatgct 83  Q
    |||||||| |||||||||||||||||||||||||||    
T  38606264 gatttccataaagtgatgagtcttcttagtaatgct 38606229  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
Q  154 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 223  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||| ||| ||  ||||||| || |||||    
T  38606137 tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat 38606068  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
Q  166 aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 223  Q
    ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| ||||    
T  41885617 aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat 41885674  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 315
Target Start/End: Original strand, 44459244 - 44459430
Alignment:
Q  129 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 228  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44459244 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44459343  T
Q  229 tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 315  Q
    | |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44459344 ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44459430  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 315
Target Start/End: Original strand, 44466777 - 44466963
Alignment:
Q  129 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 228  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44466777 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44466876  T
Q  229 tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 315  Q
    | |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44466877 ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44466963  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
Q  154 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 223  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||||||    
T  34502688 tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat 34502619  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 44460150 - 44460222
Alignment:
Q  336 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttctta 408  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| ||||||    
T  44460150 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttctta 44460222  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 44467683 - 44467755
Alignment:
Q  336 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttctta 408  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| ||||||    
T  44467683 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttctta 44467755  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 44459145 - 44459176
Alignment:
Q  48 gatttccagaaagtgatgagtcttcttagtaa 79  Q
    ||||||||||||||||||||||||||||||||    
T  44459145 gatttccagaaagtgatgagtcttcttagtaa 44459176  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 44466678 - 44466709
Alignment:
Q  48 gatttccagaaagtgatgagtcttcttagtaa 79  Q
    ||||||||||||||||||||||||||||||||    
T  44466678 gatttccagaaagtgatgagtcttcttagtaa 44466709  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
Q  154 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 236  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44459962 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44460044  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
Q  154 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 236  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44467495 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44467577  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 408
Target Start/End: Original strand, 46358821 - 46359092
Alignment:
Q  135 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa 234  Q
    ||||||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||| ||||    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  235 agatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcactatgattttaatgttaa 334  Q
    || || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  |  |||| ||   |||| |  |  ||||  |||| || |    
T  46358921 agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatgcc--gctggttccactgatgataatattca 46359018  T
Q  335 actaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttctta 408  Q
     |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| ||||||    
T  46359019 tctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttctta 46359092  T

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