View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_30 (Length: 430)
Name: NF10121_low_30
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Original strand, 42103804 - 42104207
Alignment:
| Q |
20 |
ggattgtcaagaactccaaaatcaaatgacatgttagtaattggtgatccaaacctatccagctcgttttggaatgcgtctttagcgaaataatttatgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42103804 |
ggattgtcaagaactccaaaatcaaatgacatgttagtgattggtgatccaaacctatccagctcgttttggaatgcgtctttagcgaaataatttatgt |
42103903 |
T |
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| Q |
120 |
ctcctcctgtgatttcgtcacctttcatatttgctgcaggcatagtgattgcagcattctctggctgcctaataattggatcaatgttcacggctaggcc |
219 |
Q |
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| T |
42103904 |
ctcctccagtgatttcgtcacctttcatatttgctgcaggcatagtgattgcagcattctctggctgcctaat---tggatcaatgttcacggctaggcc |
42104000 |
T |
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| Q |
220 |
aggctgcagatgctgatgctgcccttcctgacgaggaccatattccgcgactgtaaggtcaagattataagcagtttcatgaggcatgataggagggtag |
319 |
Q |
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| T |
42104001 |
ggactgcagatgctgatgctgcccttcctgacgaggaccatattccgcgactgtaaggtcaagattataagcagtttcatgaggcatgtcaggagggtag |
42104100 |
T |
|
| Q |
320 |
tgcaatggccttccactcacatacatgttttccaaagaaactatgttgtttgcatgtatataagagtaattttcttgtgcctgagactgccttggccttt |
419 |
Q |
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| T |
42104101 |
tgcaatggccttccactaacatacatgttttccaaagaaactatgttgtttgcatgtatataagagtaattttcttgtgcctgagactgccttggctttt |
42104200 |
T |
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| Q |
420 |
gcttctc |
426 |
Q |
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| T |
42104201 |
gcttctc |
42104207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 42112994 - 42113277
Alignment:
| Q |
20 |
ggattgtcaagaactccaaaatcaaatgacatgttagtaattggtgatccaaacctatccagctcgttttggaatgcgtctttagcgaaataatttatgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |||||| ||||||||| | |||||| ||| |
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| T |
42112994 |
ggattgtcaagaactccaaaatcaaatgacatgttactcaacggtgatccaaacctatccagctcgtttgggaatgtgtctttagcaatataattcatgc |
42113093 |
T |
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| Q |
120 |
ctcctcctgtgatttcgtcacctttcatatttgctgcaggcatagtgattgcagcattctctggctgcctaataattggatcaatgttcacggctaggcc |
219 |
Q |
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||||||| | ||||| ||||| |||| |||||||||||||||||| ||||||||||||||||| |||||||| ||| ||| |||| |||| | || |
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| T |
42113094 |
ctcctccgataatttcatcaccattcacatttgctgcaggcatagttattgcagcattctctggttgcctaat---tggttcactgtttgcggcgggacc |
42113190 |
T |
|
| Q |
220 |
aggctgcagatgctgatgctgcccttcctgacgaggaccatattccgcgactgtaaggtcaagattataagcagtttcatgaggcat |
306 |
Q |
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||||||||| || ||||| ||||| ||| ||| |||||||||| | | ||||| | || ||||||||||||| |||||||||||| |
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| T |
42113191 |
aggctgcagttgttgatgttgcccatcccgactaggaccatatcctgtgactgaattgtacagattataagcagcttcatgaggcat |
42113277 |
T |
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