View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_32 (Length: 418)
Name: NF10121_low_32
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 50379761 - 50379367
Alignment:
| Q |
19 |
aatgattctctctgtcttcgaaaactgccgccaaaacaatctcccctgtcaactcctccgccgtgaacaagttgccgagaaattctccggcaggatcgac |
118 |
Q |
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| T |
50379761 |
aatgattctctctgtcgtcgaaaactgccgccaaaacaatctcccctgtcaactcctccgccgtgaacaagttgccgagaaattctccggcaggatcgac |
50379662 |
T |
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| Q |
119 |
gttccagatgattgggttggtctctcaacagaatacggtggtgttatcaaagccacaaaagctgtaacgatgtttcagtcactggcgcgtagccacggtg |
218 |
Q |
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| T |
50379661 |
attccagatgattgggttggtctctcaacagaatacggtggtgttatcaaagccacaaaagctgtaacgatgtttcagtcactggcgcgtagccacggtg |
50379562 |
T |
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| Q |
219 |
ctgtgttaaatgacaatgttgaagttgtagacataaaaaacgatggtggtagcgttgttattttaaccgcgaaaggtgaaaaattccgtggcaaaaaatg |
318 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50379561 |
ctgtgttaaacgacaatgttgaagttgtagacataaaaaacgatggtggtagcgttgttattttaactgcgaaaggtgaaaaattccgtggcaaaaaatg |
50379462 |
T |
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| Q |
319 |
tgttgtgacagtgggagcttgggtgaacaagctagtaaagaagataagtggggttgaaattccgattcaaccattggaaactcacctatgctact |
413 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50379461 |
tgttgtgacagtaggagcttgggtgaacaagctagtaaagaagataagtggggttgaaattccgattcaaccattggaaactcacctatgttact |
50379367 |
T |
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