View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_33 (Length: 413)

Name: NF10121_low_33
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_33
NF10121_low_33
[»] chr8 (1 HSPs)
chr8 (1-413)||(25588818-25589230)
[»] chr5 (1 HSPs)
chr5 (1-413)||(26374033-26374445)
[»] chr6 (5 HSPs)
chr6 (1-223)||(14127350-14127572)
chr6 (227-413)||(14127118-14127304)
chr6 (1-187)||(12917336-12917522)
chr6 (1-176)||(8758026-8758201)
chr6 (260-329)||(12927368-12927437)
[»] chr3 (4 HSPs)
chr3 (1-223)||(17918502-17918724)
chr3 (227-413)||(17918770-17918956)
chr3 (21-187)||(15428753-15428919)
chr3 (260-329)||(15429010-15429079)
[»] chr2 (2 HSPs)
chr2 (1-222)||(24081380-24081600)
chr2 (254-397)||(24081164-24081306)
[»] scaffold0071 (2 HSPs)
scaffold0071 (21-187)||(33319-33485)
scaffold0071 (260-329)||(33159-33228)


Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 25588818 - 25589230
Alignment:
Q  1 tcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588818 tcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaac 25588917  T
Q  101 aattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588918 aattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagct 25589017  T
Q  201 tcaccattcaccttgggtgcatcttcaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589018 tcaccattcaccttgggtgcatcttcaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacct 25589117  T
Q  301 gttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcctccac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589118 gttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcctccac 25589217  T
Q  401 atcaattttttca 413  Q
    |||||||||||||    
T  25589218 atcaattttttca 25589230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 26374033 - 26374445
Alignment:
Q  1 tcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374033 tcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaac 26374132  T
Q  101 aattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374133 aattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagct 26374232  T
Q  201 tcaccattcaccttgggtgcatcttcaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacct 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374233 tcaccattcaccttgggtgcatcttcaatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacct 26374332  T
Q  301 gttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcctccac 400  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374333 gttcaagtgcgtattttctagccaacgccatttcttccttctccaaaacaaaaaaacctccctcattgtttttatctccctcattaattttttcctccac 26374432  T
Q  401 atcaattttttca 413  Q
    |||||||||||||    
T  26374433 atcaattttttca 26374445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14127572 - 14127350
Alignment:
Q  1 tcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaac 100  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14127572 tcatgtcttctttaccgggaaaaaataaaatcacattatctccacctctaggtactacacgaacattatcaaagccagcatcaatgattttctgttgaac 14127473  T
Q  101 aattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagct 200  Q
    |||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14127472 aattggaataaattgcccattcagcaatttagccaacgcctctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtttgct 14127373  T
Q  201 tcaccattcaccttgggtgcatc 223  Q
    |||||| ||||||||||||||||    
T  14127372 tcaccaatcaccttgggtgcatc 14127350  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 227 - 413
Target Start/End: Complemental strand, 14127304 - 14127118
Alignment:
Q  227 aataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac 326  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  14127304 aatatcaccagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgctcaagtgcgtgttttctaaccaac 14127205  T
Q  327 gccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcctccacatcaattttttca 413  Q
     ||| |||||||||||||||  ||  || |||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||    
T  14127204 accatttcttccttctccgattcaataatacctccatcattgtttttttctccctcattaattttttccttcacaacaattttttca 14127118  T

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Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 12917336 - 12917522
Alignment:
Q  1 tcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaac 100  Q
    |||| |||||||| ||||| ||||| | || |||||||||||||||||||||||  ||||||| || |||||| ||||||||||||||||| ||||| ||    
T  12917336 tcatatcttctttgccgggacaaaaaagaaccacattatctccacctctaggtaacacacgaatattatcaaaaccagcatcaatgattttttgttgcac 12917435  T
Q  101 aattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 187  Q
    ||| |||||| | ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  12917436 aataggaatatagtccccattcagcactcttgcaaacgcccctttacttgcccaaacaacatcttcattatcggaaataaacttgcg 12917522  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 8758026 - 8758201
Alignment:
Q  1 tcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaac 100  Q
    ||||||| ||||| || || |||||||||| ||| ||||  || |||||||| |  || || |||| |||||| ||  ||||||| ||||| ||||| ||    
T  8758026 tcatgtcgtcttttcctggacaaaataaaaccacgttattgccccctctaggcagcacccggacattatcaaacccgacatcaataattttttgttgcac 8758125  T
Q  101 aattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaa 176  Q
    |   || ||||| || ||||||| |||| | |||||||| ||||||||||||||||||||||| ||||||||||||    
T  8758126 agaaggtataaattctccattcaacactcttgccaacgcacctttacttgcccaaacaacatcatcattatcagaa 8758201  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 12927368 - 12927437
Alignment:
Q  260 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 329  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||| || |  |||||||||||||||    
T  12927368 ctccctttcctcctcactaaccttagcatctaatttaacctgttcaagagcctgctttctagccaacgcc 12927437  T

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Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17918502 - 17918724
Alignment:
Q  1 tcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaac 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  17918502 tcatgtcttctttaccggagcaaaataaaatcacattatctccacctctaggtactacacgaacattttcaaagccaacatcaatgattttctgttgaac 17918601  T
Q  101 aattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagct 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||    
T  17918602 aattggaataaaatccccattcagcactgtagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgatacttgcgcgtgacttttgct 17918701  T
Q  201 tcaccattcaccttgggtgcatc 223  Q
    |||||| ||||||||||||||||    
T  17918702 tcaccaatcaccttgggtgcatc 17918724  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 227 - 413
Target Start/End: Original strand, 17918770 - 17918956
Alignment:
Q  227 aataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac 326  Q
    |||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  |||||||||||||    
T  17918770 aataacaccagctccgccgcttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcgcgttttctagccaac 17918869  T
Q  327 gccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcctccacatcaattttttca 413  Q
    |||| |||||||||||||||| ||  || |||||| ||||||||||| |||||||| ||||||||||||| |||| |||||||||||    
T  17918870 gccatttcttccttctccgaatcaataatacctccatcattgtttttttctccctcgttaattttttccttcacaacaattttttca 17918956  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 15428753 - 15428919
Alignment:
Q  21 caaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaacaattggaataaaatccccat 120  Q
    |||||||||| |||||||||||| ||||||||||  || ||||||| |||||| ||||| ||||||||||||||||| ||||| |||||| | |||||||    
T  15428753 caaaataaaaccacattatctcctcctctaggtaacacccgaacattatcaaaaccagcgtcaatgattttctgttgcacaataggaatacagtccccat 15428852  T
Q  121 tcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 187  Q
    | |||||| | || |||||||||||||||||||||||||||||||| ||||| |||  |||||||||    
T  15428853 ttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg 15428919  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 15429010 - 15429079
Alignment:
Q  260 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 329  Q
    ||||||||||||||||||  | || ||||| ||||||||||||||||| || |  |||||||||||||||    
T  15429010 ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc 15429079  T

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Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24081600 - 24081380
Alignment:
Q  1 tcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaac 100  Q
    ||||||||||||||| ||| |||||||||| | |||||||||| ||||||||||  || ||||||| ||| || ||||||||||||||||||||||| |     
T  24081600 tcatgtcttctttacggggacaaaataaaacctcattatctcctcctctaggtaacacccgaacattatcgaaaccagcatcaatgattttctgttgcat 24081501  T
Q  101 aattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagct 200  Q
    ||| |||||||| | | |||||| |||| | ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||  | ||     
T  24081500 aataggaataaagttctcattcaacactcttgccaac-accctttacttgcccaaacaacatcatcattatcagaatgaaacttgcgcgtaacaattgcg 24081402  T
Q  201 tcaccattcaccttgggtgcat 222  Q
     ||||||||||||||| |||||    
T  24081401 ccaccattcaccttggatgcat 24081380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 254 - 397
Target Start/End: Complemental strand, 24081306 - 24081164
Alignment:
Q  254 tacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaa 353  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |  |||||||||||| |||  ||||||||||||| | ||  |    
T  24081306 tactttctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcctgctttctagccaacaccatctcttccttctccgtatcaaga 24081207  T
Q  354 aaacctccctcattgtttttatctccctcattaattttttcctc 397  Q
    |  |||||||||||| |||| ||||||| ||| |||||||||||    
T  24081206 agtcctccctcattgattttttctcccttatt-attttttcctc 24081164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 33485 - 33319
Alignment:
Q  21 caaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttgaacaattggaataaaatccccat 120  Q
    |||||||||| |||||||||||| ||||||||||  || ||||||| |||||| ||||| ||||||||||||||||| ||||| |||||| | |||||||    
T  33485 caaaataaaaccacattatctcctcctctaggtaacacccgaacattatcaaaaccagcgtcaatgattttctgttgcacaataggaatacagtccccat 33386  T
Q  121 tcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 187  Q
    | |||||| | || |||||||||||||||||||||||||||||||| ||||| |||  |||||||||    
T  33385 ttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg 33319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 33228 - 33159
Alignment:
Q  260 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 329  Q
    ||||||||||||||||||  | || ||||| ||||||||||||||||| || |  |||||||||||||||    
T  33228 ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc 33159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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