View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_38 (Length: 384)
Name: NF10121_low_38
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 38834755 - 38835109
Alignment:
| Q |
14 |
agaaagataatagagaaattccccatcctatataaaatattaaaaatccaacttttgaaccattcaattcaaatgtatatctccataaggaatagaagaa |
113 |
Q |
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| T |
38834755 |
agaaagataatagagaaattctccatcctatataaaatattaaaaatccaacttttgaaccattcaattcaaatgtatatctccataaggaatagaagaa |
38834854 |
T |
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| Q |
114 |
agatggctagagtcaaatctgattcattcatgaaaactcaggagttcagataaaagttttacagaatattggtacagccaaaatctagtttcactaaagc |
213 |
Q |
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| T |
38834855 |
agatggctagagtcaaatctgattcattcatgcaaactcagttgttcagataaaagttttacagaatattggtacagccaaaatctagtttcactaaagc |
38834954 |
T |
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| Q |
214 |
ataaaatttcagttacattgtagtgcaattgcgggaatagtctagttgacttctacaaaatctgataattctgcatcctcatcggaatcattgtcactct |
313 |
Q |
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| T |
38834955 |
ataaaatttcagttacattgtagtgcaattgcgggaatagtctagttgacttctacaaaatctgataattctgcatactcatcggaatcattgtcactct |
38835054 |
T |
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| Q |
314 |
cgtatccactcactacatatttgttttgattaggattagccctgtgaggcttagc |
368 |
Q |
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| T |
38835055 |
cgtatccactcactacatatttgttttgattaggattagccccgtgaggcttagc |
38835109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 9869448 - 9869550
Alignment:
| Q |
263 |
cttctacaaaatctgataattctgcatcctcatcg---gaatcattgtcactctcgtatccactcactacatatttgttttgattaggattagccctgtg |
359 |
Q |
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| T |
9869448 |
cttcttcaaaatctgataactctgcatcctcatcatcagactcattgtcactctcggattcactgactacatatttcatttgagtacgattggccctctg |
9869547 |
T |
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| Q |
360 |
agg |
362 |
Q |
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| T |
9869548 |
agg |
9869550 |
T |
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