View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_39 (Length: 374)

Name: NF10121_low_39
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_39
NF10121_low_39
[»] chr7 (6 HSPs)
chr7 (1-364)||(21229096-21229457)
chr7 (1-364)||(21228461-21228822)
chr7 (125-175)||(23653809-23653859)
chr7 (127-175)||(23659584-23659632)
chr7 (135-182)||(26147458-26147505)
chr7 (310-364)||(17887772-17887826)
[»] chr2 (1 HSPs)
chr2 (310-364)||(42153635-42153689)
[»] chr4 (6 HSPs)
chr4 (125-182)||(24661382-24661439)
chr4 (125-182)||(24603548-24603605)
chr4 (310-364)||(9739962-9740016)
chr4 (125-182)||(24660800-24660857)
chr4 (198-253)||(24579777-24579830)
chr4 (125-177)||(24669476-24669527)
[»] chr3 (2 HSPs)
chr3 (195-255)||(8443583-8443644)
chr3 (300-364)||(51118513-51118578)
[»] chr5 (1 HSPs)
chr5 (302-364)||(23032666-23032728)
[»] chr1 (4 HSPs)
chr1 (302-364)||(16799526-16799587)
chr1 (310-361)||(21536948-21536999)
chr1 (302-363)||(31260659-31260721)
chr1 (302-338)||(34104945-34104981)
[»] scaffold0059 (1 HSPs)
scaffold0059 (310-358)||(63990-64038)
[»] scaffold0002 (1 HSPs)
scaffold0002 (310-356)||(369292-369338)
[»] chr8 (1 HSPs)
chr8 (310-364)||(33983114-33983168)
[»] chr6 (2 HSPs)
chr6 (310-364)||(20723587-20723641)
chr6 (188-253)||(13824813-13824877)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 21229457 - 21229096
Alignment:
Q  1 atgtaacaaatataaaatagtatgatcatattatatagttgcaaacctctttgtatgtttacactataacatgnnnnnnnnnnnnnnnnnataattatgt 100  Q
    |||||||||||||||||| || |||||||||||||||||  ||||||||||||||||||||||||||||||||                 ||||||||||    
T  21229457 atgtaacaaatataaaatggtttgatcatattatatagtaacaaacctctttgtatgtttacactataacatgtttttatttttatttttataattatgt 21229358  T
Q  101 tgttgtaagaaatccnnnnnnnnnaattagaataattattaaatatctctaaagtacattgatgaatcatatttgtcgctttggctataattaaagttca 200  Q
     ||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21229357 cgttgtaagaaatccttttttt--aattagaataattattaaatatctctaaagtacattgatgaatcatatttgtcgctttggctataattaaagttca 21229260  T
Q  201 ttcttgtttagaaacctttcattagttattttatttcttatctagcctttcataataaagaatagatagattattgatgacatgtcatcttacgtaagca 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21229259 ttcttgtttagaaacctttcattagttattttatttattatctagcctttcataataaagaatagatagattattgatgacatgtcatcttacgtaagca 21229160  T
Q  301 tttttacaatcatttttatttagttttgatccaagttataagagttttagagcaattgcctatg 364  Q
    ||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  21229159 tttttacaaacatttttatttagttttgatccaagttacaggagttttagagcaattgcctatg 21229096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 21228822 - 21228461
Alignment:
Q  1 atgtaacaaatataaaatagtatgatcatattatatagttgcaaacctctttgtatgtttacactataacatgnnnnnnnnnnnnnnnnnataattatgt 100  Q
    |||||||||||||||||| || |||||||||||||||||  ||||||||||||||||||||||| ||||||||                 ||||||||||    
T  21228822 atgtaacaaatataaaatggtttgatcatattatatagtaacaaacctctttgtatgtttacaccataacatgtttttatttttatttttataattatgt 21228723  T
Q  101 tgttgtaagaaatccnnnnnnnnnaattagaataattattaaatatctctaaagtacattgatgaatcatatttgtcgctttggctataattaaagttca 200  Q
     ||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21228722 cgttgtaagaaatccttttttt--aattagaataattattaaatatctctaaagtacattgatgaatcatatttgtcgctttggctataattaaagttca 21228625  T
Q  201 ttcttgtttagaaacctttcattagttattttatttcttatctagcctttcataataaagaatagatagattattgatgacatgtcatcttacgtaagca 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21228624 ttcttgtttagaaacctttcattagttattttatttattatctagcctttcataataaagaatagatagattattgatgacatgtcatcttacgtaagca 21228525  T
Q  301 tttttacaatcatttttatttagttttgatccaagttataagagttttagagcaattgcctatg 364  Q
    ||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  21228524 tttttacaaacatttttatttagttttgatccaagttacaggagttttagagcaattgcctatg 21228461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 23653859 - 23653809
Alignment:
Q  125 aattagaataattattaaatatctctaaagtacattgatgaatcatatttg 175  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  23653859 aattagaataatttttaaatgtctctaaagaacattgatgaatcatatttg 23653809  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 23659632 - 23659584
Alignment:
Q  127 ttagaataattattaaatatctctaaagtacattgatgaatcatatttg 175  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||    
T  23659632 ttagaataatttttaaatgtccctaaagtacattgatgaatcatatttg 23659584  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 26147505 - 26147458
Alignment:
Q  135 attattaaatatctctaaagtacattgatgaatcatatttgtcgcttt 182  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  26147505 attattaaatatctctaaagtatattgatgaatcatttttgtcccttt 26147458  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 17887772 - 17887826
Alignment:
Q  310 tcatttttatttagttttgatccaagttataagagttttagagcaattgcctatg 364  Q
    ||||||||| |||||||||||||||| || | ||||||||||| |||||||||||    
T  17887772 tcatttttagttagttttgatccaagatagaggagttttagagaaattgcctatg 17887826  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 42153689 - 42153635
Alignment:
Q  310 tcatttttatttagttttgatccaagttataagagttttagagcaattgcctatg 364  Q
    ||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||    
T  42153689 tcatttttatttagttttgttccaaattatatgagttttagaacaattgcctatg 42153635  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 24661382 - 24661439
Alignment:
Q  125 aattagaataattattaaatatctctaaagtacattgatgaatcatatttgtcgcttt 182  Q
    ||||||||||||||||| ||||| |||||||||||| ||| |||||||||||| ||||    
T  24661382 aattagaataattattagatatcactaaagtacatttatgtatcatatttgtctcttt 24661439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 24603548 - 24603605
Alignment:
Q  125 aattagaataattattaaatatctctaaagtacattgatgaatcatatttgtcgcttt 182  Q
    ||||||||||||||||| ||||| |||||||||||| |||| |||| |||||| ||||    
T  24603548 aattagaataattattagatatcactaaagtacatttatgattcatgtttgtcccttt 24603605  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 9739962 - 9740016
Alignment:
Q  310 tcatttttatttagttttgatccaagttataagagttttagagcaattgcctatg 364  Q
    |||||||||||||||||||||| || ||| | |||||||||| ||||||| ||||    
T  9739962 tcatttttatttagttttgatctaaattagaggagttttagaacaattgcatatg 9740016  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 24660800 - 24660857
Alignment:
Q  125 aattagaataattattaaatatctctaaagtacattgatgaatcatatttgtcgcttt 182  Q
    ||||||||||||||||| ||||| |||||||||||  ||| ||||| |||||| ||||    
T  24660800 aattagaataattattagatatcactaaagtacatgtatgtatcatgtttgtcccttt 24660857  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 24579777 - 24579830
Alignment:
Q  198 tcattcttgtttagaaacctttcattagttattttatttcttatctagcctttcat 253  Q
    ||||| |||||||  |||||||||||| ||  ||||||||||||||||||||||||    
T  24579777 tcattattgtttaccaacctttcattattt--tttatttcttatctagcctttcat 24579830  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 24669476 - 24669527
Alignment:
Q  125 aattagaataattattaaatatctctaaagtacattgatgaatcatatttgtc 177  Q
    ||||||||||||||||| ||||| |||||||||||| ||| ||||| ||||||    
T  24669476 aattagaataattattagatatcactaaagtacatt-atgtatcatgtttgtc 24669527  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 8443644 - 8443583
Alignment:
Q  195 agttcattcttgtttagaaacctttcattagt-tattttatttcttatctagcctttcataa 255  Q
    |||||||| ||||||| ||||||||||||| | | |||||||||||||||||||||||||||    
T  8443644 agttcatttttgtttacaaacctttcattaatatcttttatttcttatctagcctttcataa 8443583  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 51118513 - 51118578
Alignment:
Q  300 atttttacaatcatttttatttagttttgatcc-aagttataagagttttagagcaattgcctatg 364  Q
    |||||| || ||||||||||||||||||||||| || ||| | |||||||||| ||||||||||||    
T  51118513 attttttcagtcatttttatttagttttgatccaaaattaaaggagttttagaacaattgcctatg 51118578  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 23032728 - 23032666
Alignment:
Q  302 ttttacaatcatttttatttagttttgatccaagttataagagttttagagcaattgcctatg 364  Q
    |||| ||||||||||||||||||||||||| ||  || | ||||||||||||||||| |||||    
T  23032728 tttttcaatcatttttatttagttttgatctaaactagaggagttttagagcaattgactatg 23032666  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 16799526 - 16799587
Alignment:
Q  302 ttttacaatcatttttatttagttttgatccaagttataagagttttagagcaattgcctatg 364  Q
    |||| |||| |||||||||||||||| |||| || || |||||||||||||||||||||||||    
T  16799526 tttttcaataatttttatttagtttt-atcctagatagaagagttttagagcaattgcctatg 16799587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 21536948 - 21536999
Alignment:
Q  310 tcatttttatttagttttgatccaagttataagagttttagagcaattgcct 361  Q
    ||||||||| ||||||||||||||| ||||| |||||||| | |||||||||    
T  21536948 tcatttttagttagttttgatccaaattataggagttttaaaacaattgcct 21536999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 31260659 - 31260721
Alignment:
Q  302 ttttacaatcatttttatttag-ttttgatccaagttataagagttttagagcaattgcctat 363  Q
    |||| ||| ||||||||||||  |||||||||||| || | ||||||||||||||||||||||    
T  31260659 tttttcaaacatttttatttaaattttgatccaagatagaggagttttagagcaattgcctat 31260721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 34104981 - 34104945
Alignment:
Q  302 ttttacaatcatttttatttagttttgatccaagtta 338  Q
    |||| |||||||||||||||| |||||||||||||||    
T  34104981 tttttcaatcatttttatttaattttgatccaagtta 34104945  T

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Target: scaffold0059 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 63990 - 64038
Alignment:
Q  310 tcatttttatttagttttgatccaagttataagagttttagagcaattg 358  Q
    ||||||||||||||||||||||||| ||| | |||||||||| ||||||    
T  63990 tcatttttatttagttttgatccaaattagaggagttttagaacaattg 64038  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 369292 - 369338
Alignment:
Q  310 tcatttttatttagttttgatccaagttataagagttttagagcaat 356  Q
    ||||||||||||||||||||||||||||  ||| |||||||| ||||    
T  369292 tcatttttatttagttttgatccaagtttgaagcgttttagaacaat 369338  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 33983168 - 33983114
Alignment:
Q  310 tcatttttatttagttttgatccaagttataagagttttagagcaattgcctatg 364  Q
    ||||||||||||| |||||||| ||||| || |||||||||| |||| |||||||    
T  33983168 tcatttttatttacttttgatctaagttgtaggagttttagatcaatagcctatg 33983114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 20723641 - 20723587
Alignment:
Q  310 tcatttttatttagttttgatccaagttataagagttttagagcaattgcctatg 364  Q
    |||||||||||||||||| |||||||||| |  ||||||||| ||||||| ||||    
T  20723641 tcatttttatttagtttttatccaagttagagaagttttagaacaattgcatatg 20723587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 13824877 - 13824813
Alignment:
Q  188 taattaaagttcattcttgtttagaaacctttcattagttattttatttcttatctagcctttcat 253  Q
    |||||| || |||||||||||||  |||||||||||| || |||||||||||||||| | ||||||    
T  13824877 taattagagatcattcttgtttaacaacctttcatta-tttttttatttcttatctatcttttcat 13824813  T

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