View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_40 (Length: 369)
Name: NF10121_low_40
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 27775078 - 27774748
Alignment:
| Q |
22 |
gtgtttgcttatcagacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacgg |
121 |
Q |
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| T |
27775078 |
gtgtttgcttatcagacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacgg |
27774979 |
T |
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| Q |
122 |
ctgttgtttatcttctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaattataacatttgcatctactctaagatattttt |
221 |
Q |
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| T |
27774978 |
ctgttgtttatcttctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaatgataacatttgcatctactctaagatattttt |
27774879 |
T |
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| Q |
222 |
ccttacattgatttttatattgcagatgctgagggatgactcccttcccgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgag |
321 |
Q |
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| T |
27774878 |
ccttacattgatttttatattgcagatgctgagggatgactcccttcctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgag |
27774779 |
T |
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| Q |
322 |
gagagtactgctactcctgcaaccaatgatg |
352 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27774778 |
gagagtactgctactcctgcaaccaatgatg |
27774748 |
T |
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