View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_42 (Length: 360)
Name: NF10121_low_42
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 682787 - 683120
Alignment:
| Q |
17 |
aataacaatcacttgtctccttctttgaagtcatcaattgtagcatcaaattcagctttactagaaatcatccttcccaccaccaccaacaacaataaca |
116 |
Q |
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| T |
682787 |
aataacaatcacttgtctccttctttgaagtcatcaattgtagcatcaaattcagctttactagaaatcatccttcccaccaccaccaacaacaataaca |
682886 |
T |
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| Q |
117 |
acatatacactaatactattagcacctccattactcctaaacagacacaaaaaatcacacacaaaatttccacttcttctactactataactactacaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
682887 |
acatatacactaatactattagcacctccattactcctaaacacacacaaaaaatcacacacaaaatttccacttcttctactactataactactacaaa |
682986 |
T |
|
| Q |
217 |
acatttagcaaatatttggagagagattcaagggtgcaacaactgggaaaatcttttaaaccctttacaccctattcttcgcgaagagataattcgatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
682987 |
acatttagcaaatatttggagagagattcaagggtgcaacaactgggaaaatcttttaaaccctttacaccctattcttcgcgaagagataattcgatat |
683086 |
T |
|
| Q |
317 |
ggagagtttgttacatcttcttacaaagcctttg |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
683087 |
ggagagtttgttacatcttcttacaaagcctttg |
683120 |
T |
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