View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_43 (Length: 358)

Name: NF10121_low_43
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_43
NF10121_low_43
[»] chr5 (1 HSPs)
chr5 (1-336)||(35965391-35965726)


Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 35965726 - 35965391
Alignment:
Q  1 gtggtgagaacgaagctataatttataatcgttgaaatctcattggtcagcaggaaggagatgacccaccaccctccaagttaggtgttaataatcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35965726 gtggtgagaacgaagctataatttataatcgttgaaatctcattggtcagcaggaaggagatgacccaccaccctccaagttaggtgtttataatcaatt 35965627  T
Q  101 ctaaatacaaaatcaattatactaataaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaaagtgtgtgtttatttt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35965626 ctaaatacaaaatcaattatactaacaaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaaagtgtgtgtttatttt 35965527  T
Q  201 cagctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtgaattgtttagttccatagactcataaacagtccaagttgttaaatat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35965526 cagctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtaaattgtttagttccatagactcataaacagtccaagttgttaaatat 35965427  T
Q  301 ttggtcctctcccctattaaccgcgaatattcacca 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  35965426 ttggtcctctcccctattaaccgcgaatattcacca 35965391  T

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