View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_45 (Length: 357)
Name: NF10121_low_45
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 6565474 - 6565143
Alignment:
| Q |
11 |
caaaggtctagtgagtgctctttctaacactctatgaacattctcttcatgtcttagcttcctctttaacttatcaacctgcaaatttcgagcagcataa |
110 |
Q |
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| T |
6565474 |
caaaggtctagtgagtgctctttctaacactctatgaacattctcttcatgtcttagcttcctctttaacttatcaacctgcaaatttcgagcagcataa |
6565375 |
T |
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| Q |
111 |
taactacactgaaaaattgcaaatgatgtgtagaacaattaataatgcaaggaatatgttacactcacatcttgtatcaaagccattttcctttctcgac |
210 |
Q |
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| T |
6565374 |
taactacactgaaaaattgcaaatgatgtgtagaacaattaataatgcaaggaatatgttacactcacatcttgtatcaaagccattttcctttctcgac |
6565275 |
T |
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| Q |
211 |
gtccttttttcaaagtattatgtgcagccattttcctgctccctcctttttccatcttgtcctgctttgcacattaagtgagaaacaannnnnnngtaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6565274 |
gtccttttttcaaagtattatgtgcagccattttcctgctccctcctttttccatcttgtcctgctttgcacattaagtgagaaacaatttttttgtaga |
6565175 |
T |
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| Q |
311 |
aactacggtttttgtatgaaatgagaaagaaa |
342 |
Q |
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| T |
6565174 |
aactatggtttttgtatgaaatgagaaagaaa |
6565143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 34261420 - 34261499
Alignment:
| Q |
12 |
aaaggtctagtgagtgctctttctaacactctatgaacattctcttcatgtcttagcttcctctttaacttatcaacctg |
91 |
Q |
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|||||||| || | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
34261420 |
aaaggtcttgtaaatgctctttctaaagctctgtgaacattctcttcatgtcttagcttcctcttcaacttatctacctg |
34261499 |
T |
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