View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_47 (Length: 349)
Name: NF10121_low_47
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 28 - 330
Target Start/End: Complemental strand, 8005931 - 8005631
Alignment:
| Q |
28 |
ataggacaaaaatctatctatattaattatttatttgtggacgagtaacttcttaaaaccaagtttttgagcagtgaataagaagaactggaaaattaag |
127 |
Q |
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| T |
8005931 |
ataggacaaaaatctatctatattaattatttatttgtggacgagtaacttcttaaaaccaagtttctgagcagtgaataagaagaactggaaaattaag |
8005832 |
T |
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| Q |
128 |
ttggtgatgata-taattgggaataacattagaacgacggagaagtgaattgctccnnnnnnntccagttactgcag-nnnnnnnnncaattt---atga |
222 |
Q |
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| T |
8005831 |
ttggtggtgaaactaattgggaataacattagaacgacggagaagtgaattgctccaaaaaaaaccagttactgcagtttttattttcaatttataatga |
8005732 |
T |
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| Q |
223 |
tcggttttccccagtgtgacggtggatcgacaaatttcattttcataaacaatggcgagtgaattaataacgctaacagtgcacttgggggtcggtgtga |
322 |
Q |
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| T |
8005731 |
tcggttttccccaatgtgacg-------gacaaatttcattttcataaacaatggcgagtgaattaataacgttaacagtgcacttgggggtcgttgtga |
8005639 |
T |
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| Q |
323 |
ttgccatg |
330 |
Q |
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| T |
8005638 |
ttgccatg |
8005631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 9849422 - 9849306
Alignment:
| Q |
45 |
ctatattaattatttatttgtggacgagtaacttcttaaaaccaagtttttgagcagtgaataagaagaactggaaaattaagttggtgatgatataatt |
144 |
Q |
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| T |
9849422 |
ctatattaattatttatttgtggattcgtaactttttaaaaccaattttttgagcggtgaataataagaactggaaaattaagttgttggtgaactaatt |
9849323 |
T |
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| Q |
145 |
gggaataacattagaac |
161 |
Q |
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| T |
9849322 |
gggaattacattagaac |
9849306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 9849235 - 9849178
Alignment:
| Q |
213 |
caatttatgatcggttttccccagtgtgacggtggatcgacaaatttcattttcataa |
270 |
Q |
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| T |
9849235 |
caatttattattggttttcaccaatgtatcggtggatcgacaaatttcattttcataa |
9849178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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